Variant report

Variant	rs10787760
Chromosome Location	chr10:118890693-118890694
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTBP2	chr10:118890231-118891303	H1-hESC	embryonic stem cell:	n/a	n/a
2	SUZ12	chr10:118890263-118894846	NT2-D1	testis:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:118889635..118891838-chr10:118894016..118895689,2	MCF-7	breast:
2	chr10:118887412..118889704-chr10:118889856..118891432,2	MCF-7	breast:

Variant related genes	Relation type
KIAA1598	TF binding region

Extended variants
information (count: 9 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10128516	0.81[JPT][hapmap]
rs10886038	0.81[JPT][hapmap]
rs12244454	0.80[JPT][hapmap]
rs1865955	0.86[AFR][1000 genomes]
rs2420308	0.81[JPT][hapmap]
rs3847479	0.81[JPT][hapmap]
rs7917897	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832002	chr10:118797070-119005840	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
2	nsv825577	chr10:118887637-118905958	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs10787760	ADRB1	cis	cerebellum	SCAN
rs10787760	VWA2	cis	cerebellum	SCAN
rs10787760	PNLIPRP2	cis	cerebellum	SCAN

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118888600-118890800	Weak transcription	Brain Anterior Caudate	brain
2	chr10:118889600-118890800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
3	chr10:118889800-118890800	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
4	chr10:118889800-118890800	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
5	chr10:118890000-118890800	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
6	chr10:118890000-118891200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:118890000-118894200	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
8	chr10:118890200-118890800	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
9	chr10:118890400-118890800	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
10	chr10:118890400-118891000	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
11	chr10:118890400-118891600	Bivalent/Poised TSS	Primary T cells from cord blood	blood
12	chr10:118890400-118892600	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr10:118890400-118899000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
14	chr10:118890600-118890800	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
15	chr10:118890600-118890800	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr10:118890600-118890800	Bivalent Enhancer	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr10:118890600-118890800	Bivalent Enhancer	Fetal Intestine Large	intestine
18	chr10:118890600-118890800	Bivalent Enhancer	Fetal Intestine Small	intestine
19	chr10:118890600-118890800	Bivalent Enhancer	Fetal Lung	lung
20	chr10:118890600-118891000	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
21	chr10:118890600-118891000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr10:118890600-118891000	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr10:118890600-118891000	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
24	chr10:118890600-118891200	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr10:118890600-118891200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr10:118890600-118891200	Enhancers	Liver	Liver
27	chr10:118890600-118891200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
28	chr10:118890600-118891200	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
29	chr10:118890600-118891400	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
30	chr10:118890600-118891600	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
31	chr10:118890600-118891600	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
32	chr10:118890600-118891600	Flanking Bivalent TSS/Enh	Duodenum Smooth Muscle	Duodenum
33	chr10:118890600-118892000	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
34	chr10:118890600-118892400	Bivalent Enhancer	Primary B cells from peripheral blood	blood
35	chr10:118890600-118892400	Transcr. at gene 5' and 3'	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr10:118890600-118892600	Bivalent Enhancer	Left Ventricle	heart
37	chr10:118890600-118892800	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
38	chr10:118890600-118894600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
39	chr10:118890600-118894800	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood

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