Variant report

Variant	rs1078915
Chromosome Location	chr14:104060789-104060790
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs3212026	1.00[YRI][hapmap]
rs3212050	1.00[AMR][1000 genomes]
rs3212089	1.00[AMR][1000 genomes]
rs3212107	1.00[AMR][1000 genomes]
rs56074527	1.00[AMR][1000 genomes]
rs56178734	1.00[AMR][1000 genomes]
rs57361530	1.00[AMR][1000 genomes]
rs59851270	1.00[AMR][1000 genomes]
rs60050483	1.00[AMR][1000 genomes]
rs60707289	1.00[AMR][1000 genomes]
rs7147292	1.00[AMR][1000 genomes]
rs7149566	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7158230	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74085290	1.00[AMR][1000 genomes]
rs74086576	1.00[AMR][1000 genomes]
rs8004709	1.00[AMR][1000 genomes]
rs879724	1.00[AMR][1000 genomes]
rs909133	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3332028	chr14:103581471-104328811	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	162 gene(s)	inside rSNPs	diseases
2	nsv832883	chr14:103927687-104120953	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
3	nsv902297	chr14:103956182-104061646	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
4	nsv902298	chr14:103959289-104061646	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
5	nsv902299	chr14:103967504-104061646	Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
6	nsv902300	chr14:103967504-104205811	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
7	nsv902304	chr14:103979953-104061646	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
8	nsv902305	chr14:103979953-104073551	Strong transcription Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
9	nsv566022	chr14:104007555-104092789	Genic enhancers Flanking Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:104030800-104073200	Weak transcription	Small Intestine	intestine
2	chr14:104041000-104063200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr14:104045600-104067200	Weak transcription	Primary B cells from cord blood	blood
4	chr14:104045800-104064200	Weak transcription	Hela-S3	cervix
5	chr14:104055800-104067000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr14:104055800-104073000	Weak transcription	Rectal Smooth Muscle	rectum
7	chr14:104056800-104061200	Weak transcription	Dnd41	blood
8	chr14:104056800-104064000	Weak transcription	A549	lung
9	chr14:104057000-104070800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr14:104057200-104061600	Weak transcription	Esophagus	oesophagus
11	chr14:104057400-104061600	Weak transcription	NHLF	lung
12	chr14:104057400-104062000	Weak transcription	Thymus	Thymus
13	chr14:104057600-104061400	Weak transcription	Fetal Lung	lung
14	chr14:104057600-104063600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr14:104057600-104063800	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr14:104057600-104064000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr14:104057600-104064200	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr14:104057600-104064200	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr14:104057600-104064400	Weak transcription	Stomach Smooth Muscle	stomach
20	chr14:104057600-104073400	Weak transcription	Primary T cells from cord blood	blood
21	chr14:104057800-104061800	Weak transcription	Gastric	stomach
22	chr14:104057800-104062400	Weak transcription	Aorta	Aorta
23	chr14:104057800-104063800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr14:104057800-104064200	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr14:104057800-104064200	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr14:104057800-104064200	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr14:104057800-104064200	Weak transcription	Osteobl	bone
28	chr14:104057800-104073200	Weak transcription	Fetal Intestine Large	intestine
29	chr14:104057800-104073200	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr14:104057800-104073400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr14:104057800-104073400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr14:104058000-104073400	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr14:104058200-104061600	Weak transcription	Colon Smooth Muscle	Colon
34	chr14:104059200-104062000	Enhancers	Breast Myoepithelial Primary Cells	Breast
35	chr14:104059400-104061000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
36	chr14:104059400-104061800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr14:104059400-104062000	Enhancers	GM12878-XiMat	blood
38	chr14:104059400-104062200	Enhancers	HMEC	breast
39	chr14:104059600-104060800	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr14:104059600-104061000	Enhancers	Primary B cells from peripheral blood	blood
41	chr14:104059600-104061000	Enhancers	Primary T cells fromperipheralblood	blood
42	chr14:104059600-104061000	Genic enhancers	Fetal Muscle Leg	muscle
43	chr14:104059600-104061000	Enhancers	Right Ventricle	heart
44	chr14:104059600-104061200	Enhancers	Skeletal Muscle Male	skeletal muscle
45	chr14:104059600-104061800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr14:104059600-104062200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr14:104059600-104062400	Enhancers	Cortex derived primary cultured neurospheres	brain
48	chr14:104059600-104062800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr14:104059800-104061800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr14:104059800-104062600	Enhancers	NH-A	brain

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