Variant report

Variant	rs10789220
Chromosome Location	chr1:67551209-67551210
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10789221	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10789223	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10889652	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2144655	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2144658	1.00[ASW][hapmap];1.00[CEU][hapmap];0.93[GIH][hapmap];0.94[LWK][hapmap];0.95[MEX][hapmap];0.95[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2145812	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2224501	0.97[ASN][1000 genomes]
rs2224502	1.00[ASN][1000 genomes]
rs2755267	1.00[ASN][1000 genomes]
rs2755268	1.00[ASN][1000 genomes]
rs2815385	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2815386	1.00[ASN][1000 genomes]
rs4655515	0.81[EUR][1000 genomes]
rs4655672	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4655673	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4655674	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6670381	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6672126	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6679223	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6703469	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7519768	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7531772	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7552205	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7555677	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs982131	1.00[ASN][1000 genomes]
rs983110	1.00[ASN][1000 genomes]
rs983111	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461751	chr1:67479598-67689036	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv546445	chr1:67479598-67689036	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv461762	chr1:67551209-67648460	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv546446	chr1:67551209-67648460	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10789220	MIER1	Cis_1M	lymphoblastoid	RTeQTL
rs10789220	SLC35D1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:67550600-67551800	Enhancers	Brain Inferior Temporal Lobe	brain
2	chr1:67551000-67551800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr1:67551200-67551400	Enhancers	Brain Angular Gyrus	brain
4	chr1:67551200-67551600	Enhancers	Brain Cingulate Gyrus	brain
5	chr1:67551200-67551600	Enhancers	Brain Hippocampus Middle	brain
6	chr1:67551200-67551600	Enhancers	Brain Substantia Nigra	brain

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