Variant report
| Variant | rs10789340 |
|---|---|
| Chromosome Location | chr1:72940273-72940274 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:41)
| rs_ID | r2[population] |
|---|---|
| rs1084439 | 1.00[ASN][1000 genomes] |
| rs1084440 | 1.00[ASN][1000 genomes] |
| rs1084441 | 1.00[ASN][1000 genomes] |
| rs10889955 | 1.00[ASN][1000 genomes] |
| rs10889958 | 0.81[AFR][1000 genomes] |
| rs11209968 | 1.00[ASN][1000 genomes] |
| rs11209969 | 1.00[ASN][1000 genomes] |
| rs11209972 | 0.93[AFR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12026130 | 1.00[ASN][1000 genomes] |
| rs12033462 | 1.00[ASN][1000 genomes] |
| rs12035763 | 0.96[ASN][1000 genomes] |
| rs12035943 | 1.00[ASN][1000 genomes] |
| rs12759396 | 1.00[ASN][1000 genomes] |
| rs1373913 | 1.00[ASN][1000 genomes] |
| rs1445581 | 0.96[ASN][1000 genomes] |
| rs1445582 | 1.00[ASN][1000 genomes] |
| rs1596762 | 1.00[ASN][1000 genomes] |
| rs1822977 | 1.00[ASN][1000 genomes] |
| rs1822979 | 0.90[AFR][1000 genomes];0.80[EUR][1000 genomes] |
| rs2121055 | 1.00[ASN][1000 genomes] |
| rs2121056 | 1.00[ASN][1000 genomes] |
| rs2422222 | 1.00[ASN][1000 genomes] |
| rs4649956 | 1.00[ASN][1000 genomes] |
| rs4649957 | 0.91[AFR][1000 genomes];0.80[EUR][1000 genomes] |
| rs4650138 | 1.00[ASN][1000 genomes] |
| rs4650139 | 1.00[ASN][1000 genomes] |
| rs6424471 | 1.00[ASN][1000 genomes] |
| rs7523080 | 1.00[ASN][1000 genomes] |
| rs7531797 | 1.00[ASN][1000 genomes] |
| rs7534013 | 1.00[ASN][1000 genomes] |
| rs7535539 | 1.00[ASN][1000 genomes] |
| rs7536869 | 1.00[ASN][1000 genomes] |
| rs7550173 | 1.00[ASN][1000 genomes] |
| rs782210 | 1.00[ASN][1000 genomes] |
| rs782212 | 1.00[ASN][1000 genomes] |
| rs782219 | 1.00[ASN][1000 genomes] |
| rs782239 | 1.00[ASN][1000 genomes] |
| rs782243 | 1.00[ASN][1000 genomes] |
| rs782244 | 1.00[ASN][1000 genomes] |
| rs782246 | 1.00[ASN][1000 genomes] |
| rs782252 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv947113 | chr1:72810737-72948614 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 2 | esv2422432 | chr1:72821856-73148651 | Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv871873 | chr1:72861847-72975877 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 4 | nsv870463 | chr1:72861847-72995398 | Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 5 | nsv871758 | chr1:72861847-72995398 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 6 | nsv830215 | chr1:72869049-73029787 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs10789340 | ASB17 | cis | parietal | SCAN |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:72939400-72941800 | Enhancers | Fetal Brain Male | brain |
| 2 | chr1:72940200-72940400 | Enhancers | Fetal Brain Female | brain |
