Variant report

Variant	rs10791872
Chromosome Location	chr11:66138434-66138435
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:29)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:29 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:66138184..66138917-chr12:133287263..133287969,2	HCT-116	colon:
2	chr11:66049888..66052811-chr11:66137402..66139383,3	MCF-7	breast:
3	chr11:66078412..66081908-chr11:66138198..66140974,6	K562	blood:
4	chr11:66099391..66103232-chr11:66136865..66139271,3	K562	blood:
5	chr11:66137143..66138967-chr11:66245660..66249202,3	MCF-7	breast:
6	chr11:66137845..66139913-chr11:66247832..66250470,2	K562	blood:
7	chr11:66078878..66081845-chr11:66137612..66139742,3	K562	blood:
8	chr11:66102581..66106910-chr11:66137391..66141246,5	MCF-7	breast:
9	chr11:66137724..66140546-chr11:66233440..66235364,2	MCF-7	breast:
10	chr11:66138351..66141046-chr11:66154511..66157251,2	K562	blood:
11	chr11:66137324..66140278-chr12:53399350..53400945,2	MCF-7	breast:
12	chr11:66099391..66101951-chr11:66136865..66139271,2	K562	blood:
13	chr11:66108426..66118730-chr11:66133678..66141000,25	MCF-7	breast:
14	chr11:65273006..65275716-chr11:66137072..66138747,2	K562	blood:
15	chr11:66137325..66140119-chr11:66205058..66207807,2	K562	blood:
16	chr11:66102037..66105089-chr11:66137738..66140850,8	MCF-7	breast:
17	chr11:66055397..66059696-chr11:66135983..66139913,5	K562	blood:
18	chr11:66136181..66138933-chr11:66377643..66379684,2	K562	blood:
19	chr11:66137544..66141665-chr11:66155643..66157959,3	MCF-7	breast:
20	chr11:66035212..66038142-chr11:66136666..66139462,2	MCF-7	breast:
21	chr11:66049515..66053153-chr11:66136549..66141980,4	K562	blood:
22	chr11:66054859..66059696-chr11:66135983..66141726,7	K562	blood:
23	chr11:66138363..66140696-chr11:66204293..66206330,3	MCF-7	breast:
24	chr11:66081234..66083776-chr11:66137430..66138945,2	MCF-7	breast:
25	chr11:66138177..66141064-chr11:66382767..66386168,3	MCF-7	breast:
26	chr11:66052361..66057023-chr11:66137906..66140994,4	MCF-7	breast:
27	chr11:66032275..66033954-chr11:66138154..66140084,2	MCF-7	breast:
28	chr11:66137427..66139216-chr11:66204368..66207293,2	MCF-7	breast:
29	chr11:66103854..66118324-chr11:66119048..66141728,55	K562	blood:

No data

Variant related genes	Relation type
ENSG00000247077	Chromatin interaction
ENSG00000174871	Chromatin interaction
ENSG00000174851	Chromatin interaction
ENSG00000255517	Chromatin interaction
ENSG00000174791	Chromatin interaction
ENSG00000254855	Chromatin interaction
ENSG00000239306	Chromatin interaction
ENSG00000254458	Chromatin interaction
ENSG00000254762	Chromatin interaction
ENSG00000248643	Chromatin interaction
ENSG00000174744	Chromatin interaction
ENSG00000063046	Chromatin interaction
ENSG00000174547	Chromatin interaction
ENSG00000254736	Chromatin interaction
ENSG00000174903	Chromatin interaction
ENSG00000255468	Chromatin interaction
ENSG00000254756	Chromatin interaction
ENSG00000254986	Chromatin interaction
ENSG00000174516	Chromatin interaction
ENSG00000179292	Chromatin interaction
ENSG00000174684	Chromatin interaction

Extended variants
information (count: 74 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs1039594	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1047029	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10750784	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10791869	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10791874	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10791876	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10896111	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10896112	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10896115	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10896116	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11227465	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11601396	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11823140	0.86[EUR][1000 genomes]
rs12416747	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12576293	0.83[ASN][1000 genomes]
rs12576299	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12577196	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12785321	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12785651	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12786563	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12794121	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1546358	0.92[EUR][1000 genomes]
rs1784029	0.84[EUR][1000 genomes]
rs1785633	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1785639	0.86[EUR][1000 genomes]
rs1892940	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2236679	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2279861	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2279862	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2282530	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2282531	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3016767	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3177514	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34043951	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4244813	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4930177	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4930178	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4930179	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4930181	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4930360	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4930362	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4930363	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4930366	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4930368	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55998145	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56123976	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56321771	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61891449	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6591213	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6591215	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6591217	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs66810040	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67780191	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7104253	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7104570	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7105015	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7105401	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7107191	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7110944	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7117630	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7126018	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73489638	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7938676	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7939111	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7940980	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs905770	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs947978	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3335923	chr11:65741698-66175759	Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
2	esv3407551	chr11:65794503-66158322	Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
3	esv3392427	chr11:65981489-66273695	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	118 gene(s)	inside rSNPs	diseases
4	nsv897771	chr11:66011280-66362997	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	124 gene(s)	inside rSNPs	diseases
5	nsv897772	chr11:66018155-66254085	Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	118 gene(s)	inside rSNPs	diseases
6	nsv897780	chr11:66083129-66362997	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
7	nsv832193	chr11:66120339-66278805	Strong transcription Bivalent/Poised TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10791872	RP11-867G23.12	cis	Whole Blood	GTEx
rs10791872	RIN1	cis	Whole Blood	GTEx

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66128200-66138600	Weak transcription	Dnd41	blood
2	chr11:66131000-66138600	Weak transcription	Liver	Liver
3	chr11:66137000-66138600	Enhancers	HSMM	muscle
4	chr11:66137400-66138600	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
5	chr11:66137400-66139800	Active TSS	GM12878-XiMat	blood
6	chr11:66137400-66140200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr11:66137600-66138600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr11:66137600-66139000	Enhancers	Fetal Brain Male	brain
9	chr11:66137600-66140200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr11:66137600-66140200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:66137600-66140200	Active TSS	Psoas Muscle	Psoas
12	chr11:66137600-66140400	Active TSS	H9 Cell Line	embryonic stem cell
13	chr11:66137600-66140400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr11:66137800-66138600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr11:66137800-66138600	Active TSS	Right Ventricle	heart
16	chr11:66137800-66138600	Weak transcription	Stomach Mucosa	stomach
17	chr11:66137800-66138800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
18	chr11:66137800-66138800	Weak transcription	HSMMtube	muscle
19	chr11:66137800-66140000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
20	chr11:66137800-66140200	Active TSS	H1 Cell Line	embryonic stem cell
21	chr11:66137800-66140200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr11:66137800-66140400	Active TSS	ES-I3 Cell Line	embryonic stem cell
23	chr11:66137800-66140400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr11:66137800-66140400	Active TSS	HUES6 Cell Line	embryonic stem cell
25	chr11:66137800-66140400	Active TSS	iPS-15b Cell Line	embryonic stem cell
26	chr11:66137800-66140400	Active TSS	iPS-20b Cell Line	embryonic stem cell
27	chr11:66137800-66140400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr11:66138000-66139800	Active TSS	Hela-S3	cervix
29	chr11:66138000-66140000	Active TSS	A549	lung
30	chr11:66138000-66140200	Active TSS	iPS-18 Cell Line	embryonic stem cell
31	chr11:66138000-66140200	Active TSS	Fetal Kidney	kidney
32	chr11:66138000-66140200	Active TSS	K562	blood
33	chr11:66138000-66140400	Active TSS	HUES48 Cell Line	embryonic stem cell
34	chr11:66138000-66140400	Active TSS	HUES64 Cell Line	embryonic stem cell
35	chr11:66138200-66138600	Active TSS	Fetal Heart	heart
36	chr11:66138200-66138800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr11:66138200-66138800	Flanking Active TSS	NHEK	skin
38	chr11:66138200-66139000	Flanking Active TSS	HMEC	breast
39	chr11:66138400-66138600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr11:66138400-66138600	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr11:66138400-66138600	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr11:66138400-66138600	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
43	chr11:66138400-66138600	Enhancers	Primary B cells from cord blood	blood
44	chr11:66138400-66138600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
45	chr11:66138400-66138600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
46	chr11:66138400-66138600	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr11:66138400-66138600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr11:66138400-66138600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr11:66138400-66138600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr11:66138400-66138600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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