Variant report

Variant	rs10791977
Chromosome Location	chr11:68069418-68069419
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:68039293..68041067-chr11:68068741..68070951,2	MCF-7	breast:
2	chr11:68068966..68071609-chr11:68079466..68081897,3	MCF-7	breast:
3	chr11:67980948..67983434-chr11:68069387..68072192,2	MCF-7	breast:
4	chr11:68037273..68041335-chr11:68062983..68069935,8	K562	blood:

Variant related genes	Relation type
ENSG00000110066	Chromatin interaction
ENSG00000162337	Chromatin interaction
ENSG00000171067	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs55640445	1.00[AMR][1000 genomes]
rs55873510	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825963	chr11:67763676-68197054	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	149 gene(s)	inside rSNPs	diseases
2	esv3347272	chr11:67969427-68218997	Strong transcription Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	78 gene(s)	inside rSNPs	diseases
3	nsv897857	chr11:68056770-68231240	Enhancers Genic enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	esv3479397	chr11:68066920-68069567	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	esv3479408	chr11:68066920-68069567	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:68061800-68070000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr11:68065000-68071600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:68065600-68069800	Weak transcription	HSMM	muscle
4	chr11:68065600-68070000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr11:68065600-68070000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr11:68065600-68070000	Weak transcription	Thymus	Thymus
7	chr11:68065600-68070200	Weak transcription	GM12878-XiMat	blood
8	chr11:68065600-68079200	Weak transcription	Rectal Smooth Muscle	rectum
9	chr11:68065800-68069800	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr11:68065800-68070200	Weak transcription	Primary B cells from peripheral blood	blood
11	chr11:68065800-68070200	Weak transcription	K562	blood
12	chr11:68065800-68078400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr11:68066200-68070200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr11:68066600-68069600	Weak transcription	Fetal Muscle Leg	muscle
15	chr11:68066600-68070200	Weak transcription	Placenta	Placenta
16	chr11:68066600-68078800	Weak transcription	Stomach Smooth Muscle	stomach
17	chr11:68066800-68069800	Weak transcription	Adipose Nuclei	Adipose
18	chr11:68066800-68069800	Weak transcription	Small Intestine	intestine
19	chr11:68066800-68070000	Weak transcription	Spleen	Spleen
20	chr11:68066800-68071000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr11:68066800-68079600	Weak transcription	Right Atrium	heart
22	chr11:68067000-68069800	Weak transcription	Stomach Mucosa	stomach
23	chr11:68067000-68069800	Weak transcription	Hela-S3	cervix
24	chr11:68067000-68070000	Weak transcription	Duodenum Mucosa	Duodenum
25	chr11:68067000-68070000	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr11:68067000-68070000	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr11:68067000-68070000	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr11:68067000-68070200	Weak transcription	Gastric	stomach
29	chr11:68067000-68070400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr11:68067800-68069800	Weak transcription	A549	lung
31	chr11:68068000-68069800	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr11:68068000-68070000	Weak transcription	Right Ventricle	heart
33	chr11:68068200-68069800	Weak transcription	Liver	Liver
34	chr11:68068200-68069800	Weak transcription	Colonic Mucosa	Colon
35	chr11:68069200-68071600	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr11:68069400-68069800	Enhancers	HepG2	liver
37	chr11:68069400-68070600	Enhancers	Fetal Muscle Trunk	muscle
38	chr11:68069400-68071200	Enhancers	Fetal Intestine Small	intestine
39	chr11:68069400-68071200	Enhancers	Rectal Mucosa Donor 31	rectum
40	chr11:68069400-68072400	Enhancers	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links