Variant report

Variant	rs10795104
Chromosome Location	chr10:3993198-3993199
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:3979732..3981697-chr10:3991468..3993374,2	MCF-7	breast:
2	chr10:3827341..3829174-chr10:3993073..3995217,2	K562	blood:
3	chr10:3987220..3989447-chr10:3991646..3993576,2	K562	blood:

Variant related genes	Relation type
ENSG00000067082	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12253501	0.82[CEU][hapmap]
rs2025682	0.80[EUR][1000 genomes]
rs4593901	0.80[EUR][1000 genomes]
rs4881257	0.80[EUR][1000 genomes]
rs4881258	0.84[CEU][hapmap]
rs4881259	0.84[CEU][hapmap]
rs57306718	0.83[EUR][1000 genomes]
rs6601786	0.85[CEU][hapmap];0.90[JPT][hapmap]
rs7898425	0.84[CEU][hapmap];0.81[AMR][1000 genomes]
rs7899906	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043680	chr10:3551191-4038002	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
3	nsv894784	chr10:3985194-4051081	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:3979000-3994400	Weak transcription	Stomach Mucosa	stomach
2	chr10:3981800-4001800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:3985000-3994200	Weak transcription	Gastric	stomach
4	chr10:3986000-3997600	Weak transcription	Right Atrium	heart
5	chr10:3987200-3993800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr10:3987800-3993600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr10:3987800-3993800	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr10:3987800-3993800	Enhancers	Primary T killer memory cells from peripheral blood	blood
9	chr10:3988000-3993800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr10:3988800-3993400	Enhancers	Primary T cells fromperipheralblood	blood
11	chr10:3988800-3997400	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr10:3989600-3994200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr10:3990000-3998400	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr10:3990400-3993800	Enhancers	Primary T helper naive cells from peripheral blood	blood
15	chr10:3990600-3993600	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr10:3990600-3994600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr10:3990800-3993400	Enhancers	Fetal Thymus	thymus
18	chr10:3991000-3993600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr10:3991000-3993800	Enhancers	Primary T cells from cord blood	blood
20	chr10:3991200-3993200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
21	chr10:3991200-3993600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr10:3991400-3997800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr10:3991400-3997800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr10:3992000-3997400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr10:3992200-3994400	Weak transcription	Fetal Muscle Trunk	muscle
26	chr10:3992200-3996800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr10:3992200-3996800	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr10:3992200-3997600	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr10:3992400-3993200	Enhancers	Primary hematopoietic stem cells	blood
30	chr10:3992400-3996800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr10:3992400-3997000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr10:3992400-3997000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr10:3992400-3997600	Weak transcription	Fetal Muscle Leg	muscle
34	chr10:3992800-3993200	Flanking Active TSS	Dnd41	blood
35	chr10:3992800-3993400	Enhancers	Primary hematopoietic stem cells short term culture	blood
36	chr10:3992800-3993400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
37	chr10:3992800-3994000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
38	chr10:3992800-3994600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr10:3993000-3993200	Enhancers	Spleen	Spleen
40	chr10:3993000-3997400	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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