Variant report

Variant	rs10795298
Chromosome Location	chr10:856325-856326
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:840309..840941-chr10:856321..856837,2	MCF-7	breast:
2	chr10:835119..835814-chr10:856015..856751,2	MCF-7	breast:
3	chr10:851217..854668-chr10:856285..859147,3	MCF-7	breast:
4	chr10:854955..857145-chr10:859946..862172,2	MCF-7	breast:
5	chr10:556739..557438-chr10:855963..856846,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000107929	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10795299	1.00[AFR][1000 genomes]
rs1536339	1.00[AFR][1000 genomes]
rs4881539	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs7899045	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs7910159	1.00[AFR][1000 genomes]
rs947404	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916591	chr10:224406-1088734	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv540386	chr10:224406-1197416	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv1048859	chr10:442805-887622	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
4	nsv1039958	chr10:450753-889167	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
5	nsv540400	chr10:450753-889167	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
6	nsv549753	chr10:458477-894838	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
7	nsv1054659	chr10:611444-1133578	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
8	nsv948602	chr10:708293-944641	Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
9	nsv949063	chr10:708293-974870	Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
10	nsv466697	chr10:734229-1129527	ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
11	nsv549765	chr10:734229-1129527	Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
12	nsv894718	chr10:763714-861390	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
13	nsv1043812	chr10:776547-981126	Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
14	nsv540406	chr10:776547-981126	Bivalent Enhancer Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
15	nsv530116	chr10:776548-1401075	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
16	nsv948978	chr10:813426-1019115	Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
17	nsv1048707	chr10:834439-915534	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
18	nsv466698	chr10:836115-888073	ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
19	nsv549766	chr10:836115-888073	ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
20	nsv5498	chr10:849137-860462	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:844600-857400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr10:849400-856400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr10:849600-877800	Strong transcription	Fetal Intestine Small	intestine
4	chr10:850200-857200	Weak transcription	Small Intestine	intestine
5	chr10:850600-856600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr10:850600-859000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr10:850800-856600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr10:850800-857800	Weak transcription	Colon Smooth Muscle	Colon
9	chr10:850800-862800	Weak transcription	Right Atrium	heart
10	chr10:850800-864800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr10:850800-877800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr10:851000-856600	Strong transcription	Fetal Brain Female	brain
13	chr10:851000-883000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr10:851200-856600	Strong transcription	Esophagus	oesophagus
15	chr10:851200-856600	Strong transcription	NHLF	lung
16	chr10:851200-867000	Strong transcription	Primary neutrophils fromperipheralblood	blood
17	chr10:851200-872400	Strong transcription	Stomach Smooth Muscle	stomach
18	chr10:851200-877800	Strong transcription	Fetal Stomach	stomach
19	chr10:851400-856600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr10:851400-857800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr10:851400-858000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr10:851400-859000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr10:851400-862200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr10:851400-862800	Strong transcription	Lung	lung
25	chr10:851400-867200	Strong transcription	Placenta	Placenta
26	chr10:851400-878600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr10:851600-863600	Strong transcription	Primary B cells from peripheral blood	blood
28	chr10:851600-865400	Strong transcription	Pancreas	Pancrea
29	chr10:851600-867200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr10:851600-872800	Strong transcription	Cortex derived primary cultured neurospheres	brain
31	chr10:851600-876600	Strong transcription	Sigmoid Colon	Sigmoid Colon
32	chr10:851600-883000	Strong transcription	Fetal Intestine Large	intestine
33	chr10:851600-889800	Strong transcription	Dnd41	blood
34	chr10:851600-890800	Strong transcription	Duodenum Mucosa	Duodenum
35	chr10:851600-895600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr10:851800-865600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr10:851800-867800	Weak transcription	Pancreatic Islets	Pancreatic Islet
38	chr10:851800-868000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
39	chr10:851800-877800	Strong transcription	Liver	Liver
40	chr10:851800-879000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr10:851800-894000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr10:851800-895800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
43	chr10:852000-856600	Strong transcription	Colonic Mucosa	Colon
44	chr10:852000-868000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr10:852000-872400	Strong transcription	H1 Cell Line	embryonic stem cell
46	chr10:852000-876200	Strong transcription	Ovary	ovary
47	chr10:852000-877200	Strong transcription	HUES48 Cell Line	embryonic stem cell
48	chr10:852000-882800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr10:852200-856800	Strong transcription	H9 Cell Line	embryonic stem cell
50	chr10:852200-864600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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