Variant report

Variant	rs10795763
Chromosome Location	chr10:6096199-6096200
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1924138	0.88[EUR][1000 genomes]
rs2256774	0.82[CEU][hapmap]
rs7917726	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34147	chr10:5726821-6105717	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
4	nsv894814	chr10:6078032-6100725	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10795763	PFKP	cis	parietal	SCAN

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6093400-6096200	Enhancers	Primary hematopoietic stem cells	blood
2	chr10:6093400-6096200	Enhancers	Rectal Mucosa Donor 29	rectum
3	chr10:6093400-6096400	Enhancers	Fetal Thymus	thymus
4	chr10:6093400-6096800	Enhancers	Adipose Nuclei	Adipose
5	chr10:6093400-6097200	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr10:6093400-6101000	Weak transcription	Psoas Muscle	Psoas
7	chr10:6093400-6102800	Enhancers	Primary B cells from peripheral blood	blood
8	chr10:6093800-6104200	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
9	chr10:6094000-6097400	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
10	chr10:6094200-6096400	Enhancers	Sigmoid Colon	Sigmoid Colon
11	chr10:6094200-6097200	Enhancers	Spleen	Spleen
12	chr10:6094400-6096200	Enhancers	Placenta	Placenta
13	chr10:6094400-6096200	Enhancers	Small Intestine	intestine
14	chr10:6094600-6096600	Enhancers	Primary B cells from cord blood	blood
15	chr10:6094800-6096400	Enhancers	Primary T cells from cord blood	blood
16	chr10:6094800-6096400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr10:6094800-6096400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr10:6094800-6096800	Enhancers	Primary T killer memory cells from peripheral blood	blood
19	chr10:6094800-6097200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
20	chr10:6095000-6096200	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr10:6095000-6096200	Enhancers	HUVEC	blood vessel
22	chr10:6095000-6096400	Enhancers	Primary monocytes fromperipheralblood	blood
23	chr10:6095000-6096400	Enhancers	Gastric	stomach
24	chr10:6095000-6096800	Enhancers	Fetal Intestine Small	intestine
25	chr10:6095000-6097000	Enhancers	Primary T helper cells fromperipheralblood	blood
26	chr10:6095000-6097200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
27	chr10:6095200-6096200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr10:6095200-6096400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr10:6095200-6096600	Enhancers	Primary T cells fromperipheralblood	blood
30	chr10:6095200-6096600	Enhancers	Primary T helper naive cells from peripheral blood	blood
31	chr10:6095200-6098400	Weak transcription	Left Ventricle	heart
32	chr10:6095400-6097400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
33	chr10:6095600-6096200	Enhancers	Colonic Mucosa	Colon
34	chr10:6095600-6096400	Enhancers	Rectal Mucosa Donor 31	rectum
35	chr10:6095800-6096200	Bivalent Enhancer	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr10:6095800-6096200	Enhancers	Primary neutrophils fromperipheralblood	blood
37	chr10:6095800-6096200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
38	chr10:6095800-6096200	Flanking Active TSS	Duodenum Mucosa	Duodenum
39	chr10:6095800-6096200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
40	chr10:6095800-6096200	Flanking Active TSS	Stomach Mucosa	stomach
41	chr10:6095800-6096200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
42	chr10:6095800-6096400	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr10:6095800-6096400	Enhancers	Pancreas	Pancrea
44	chr10:6095800-6096600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
45	chr10:6095800-6096600	Flanking Active TSS	HepG2	liver
46	chr10:6095800-6096800	Enhancers	Fetal Intestine Large	intestine
47	chr10:6095800-6097200	Transcr. at gene 5' and 3'	Primary T regulatory cells fromperipheralblood	blood
48	chr10:6096000-6096200	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr10:6096000-6096200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr10:6096000-6096200	Flanking Active TSS	Liver	Liver

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