Variant report

Variant	rs10796089
Chromosome Location	chr10:6429168-6429169
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:6320988..6323226-chr10:6428570..6430492,2	MCF-7	breast:
2	chr10:6409518..6411373-chr10:6428852..6430851,2	MCF-7	breast:
3	chr10:6242556..6245849-chr10:6429136..6431371,4	MCF-7	breast:
4	chr10:6242870..6245619-chr10:6428211..6431866,3	MCF-7	breast:
5	chr10:6426504..6429518-chr10:6435004..6438172,3	MCF-7	breast:
6	chr10:6428885..6430498-chr10:6435186..6436882,2	MCF-7	breast:
7	chr10:6336243..6339206-chr10:6427846..6430034,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000170525	Chromatin interaction
ENSG00000226705	Chromatin interaction
ENSG00000213994	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10906397	0.92[AFR][1000 genomes]
rs11258372	1.00[EUR][1000 genomes]
rs11258441	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11258935	1.00[EUR][1000 genomes]
rs11258970	1.00[EUR][1000 genomes]
rs34169455	1.00[EUR][1000 genomes]
rs584413	1.00[EUR][1000 genomes]
rs585932	1.00[EUR][1000 genomes]
rs586439	1.00[EUR][1000 genomes]
rs587378	1.00[EUR][1000 genomes]
rs599922	1.00[EUR][1000 genomes]
rs601150	1.00[EUR][1000 genomes]
rs601622	1.00[EUR][1000 genomes]
rs605806	1.00[EUR][1000 genomes]
rs611505	1.00[EUR][1000 genomes]
rs612497	1.00[EUR][1000 genomes]
rs615546	1.00[EUR][1000 genomes]
rs617197	1.00[EUR][1000 genomes]
rs630027	1.00[EUR][1000 genomes]
rs631508	1.00[EUR][1000 genomes]
rs644180	1.00[EUR][1000 genomes]
rs646830	1.00[EUR][1000 genomes]
rs647063	1.00[EUR][1000 genomes]
rs647279	1.00[EUR][1000 genomes]
rs650471	1.00[EUR][1000 genomes]
rs681023	1.00[EUR][1000 genomes]
rs682560	1.00[EUR][1000 genomes]
rs7076482	0.97[ASN][1000 genomes]
rs7908102	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs806394	1.00[EUR][1000 genomes]
rs806395	1.00[EUR][1000 genomes]
rs806412	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1054044	chr10:6155144-6487217	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv894836	chr10:6246678-6435374	Flanking Active TSS Strong transcription Weak transcription Enhancers Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv430123	chr10:6309402-6448384	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv430125	chr10:6322167-6477267	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv1053440	chr10:6354798-6669469	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
7	esv3391799	chr10:6426846-6431244	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6424800-6429200	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr10:6425600-6430200	Weak transcription	Dnd41	blood
3	chr10:6425600-6430800	Weak transcription	Adipose Nuclei	Adipose
4	chr10:6425600-6432800	Weak transcription	Ovary	ovary
5	chr10:6425600-6443600	Weak transcription	Aorta	Aorta
6	chr10:6427600-6430200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr10:6427600-6430800	Weak transcription	Thymus	Thymus
8	chr10:6428200-6430000	Weak transcription	A549	lung
9	chr10:6428800-6429200	Active TSS	Fetal Kidney	kidney
10	chr10:6428800-6430800	Weak transcription	Brain Anterior Caudate	brain
11	chr10:6429000-6429200	Enhancers	Pancreas	Pancrea

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