Variant report

Variant	rs10797092
Chromosome Location	chr1:161037042-161037043
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:161013921..161016040-chr1:161036662..161039623,2	MCF-7	breast:
2	chr1:160991301..160993466-chr1:161036693..161038459,2	K562	blood:
3	chr1:161035244..161038070-chr1:161039157..161043697,5	MCF-7	breast:
4	chr1:161030433..161032581-chr1:161036169..161038406,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000158773	Chromatin interaction
ENSG00000186517	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 11 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10797091	0.82[EUR][1000 genomes]
rs11265548	0.97[MKK][hapmap];0.82[YRI][hapmap]
rs12118313	1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4396136	0.87[ASW][hapmap];0.92[CHD][hapmap];0.94[MEX][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4559524	0.90[MKK][hapmap]
rs6662441	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6671492	0.84[CHD][hapmap];0.88[TSI][hapmap];0.82[YRI][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530077	chr1:160836448-161284904	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv3221	chr1:161008175-161052979	Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

mRNA abundance (count:11)

SNP	Gene	Cis/trans	Tissue	Source
rs10797092	F11R	cis	cerebellum	SCAN
rs10797092	TSTD1	cis	Artery Tibial	GTEx
rs10797092	PVRL4	cis	parietal	SCAN
rs10797092	F11R	Cis_1M	lymphoblastoid	RTeQTL
rs10797092	APOA1BP	cis	cerebellum	SCAN
rs10797092	RAB11FIP1	trans	cerebellum	SCAN
rs10797092	NDUFS2	cis	parietal	SCAN
rs10797092	SMG5	cis	cerebellum	SCAN
rs10797092	RXFP4	cis	parietal	SCAN
rs10797092	TSTD1	cis	Nerve Tibial	GTEx
rs10797092	DDR2	cis	parietal	SCAN

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:161016400-161037800	Weak transcription	Colonic Mucosa	Colon
2	chr1:161021600-161038400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr1:161024800-161038200	Weak transcription	Lung	lung
4	chr1:161026400-161039600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr1:161027400-161037800	Weak transcription	Esophagus	oesophagus
6	chr1:161029800-161038000	Weak transcription	Stomach Mucosa	stomach
7	chr1:161030000-161046200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr1:161034000-161037600	Genic enhancers	Primary B cells from peripheral blood	blood
9	chr1:161035000-161038400	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr1:161035800-161037600	Genic enhancers	Fetal Thymus	thymus
11	chr1:161035800-161038000	Transcr. at gene 5' and 3'	Primary T regulatory cells fromperipheralblood	blood
12	chr1:161036000-161037400	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr1:161036000-161037800	Transcr. at gene 5' and 3'	Primary T cells fromperipheralblood	blood
14	chr1:161036000-161038000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
15	chr1:161036000-161038000	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
16	chr1:161036000-161038200	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
17	chr1:161036200-161037400	Enhancers	Primary hematopoietic stem cells	blood
18	chr1:161036400-161037200	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr1:161036400-161038200	Flanking Active TSS	Primary T cells from cord blood	blood
20	chr1:161036600-161037400	Enhancers	Thymus	Thymus
21	chr1:161036600-161039600	Active TSS	Rectal Smooth Muscle	rectum
22	chr1:161036600-161040200	Enhancers	K562	blood
23	chr1:161036800-161037600	Active TSS	Duodenum Mucosa	Duodenum
24	chr1:161036800-161037800	Weak transcription	Adipose Nuclei	Adipose
25	chr1:161036800-161037800	Active TSS	Rectal Mucosa Donor 29	rectum
26	chr1:161036800-161037800	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr1:161036800-161037800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
28	chr1:161036800-161038000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
29	chr1:161036800-161038600	Enhancers	Spleen	Spleen
30	chr1:161036800-161040200	Flanking Active TSS	Primary B cells from cord blood	blood
31	chr1:161037000-161037200	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
32	chr1:161037000-161037200	Genic enhancers	Dnd41	blood
33	chr1:161037000-161037400	Enhancers	Primary monocytes fromperipheralblood	blood
34	chr1:161037000-161037400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
35	chr1:161037000-161037400	Enhancers	Primary T helper naive cells from peripheral blood	blood
36	chr1:161037000-161037400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
37	chr1:161037000-161037400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr1:161037000-161037400	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
39	chr1:161037000-161037400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr1:161037000-161037400	Genic enhancers	Primary mononuclear cells fromperipheralblood	Blood
41	chr1:161037000-161037600	Weak transcription	Placenta	Placenta
42	chr1:161037000-161037600	Active TSS	GM12878-XiMat	blood
43	chr1:161037000-161038200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
44	chr1:161037000-161038200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
45	chr1:161037000-161038400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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