Variant report

Variant	rs10798035
Chromosome Location	chr1:186050417-186050418
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:186024136..186026677-chr1:186048146..186050560,2	K562	blood:
2	chr1:186043940..186045863-chr1:186047900..186050719,2	MCF-7	breast:
3	chr1:186050014..186052274-chr1:186058770..186060549,2	K562	blood:
4	chr1:186048997..186051706-chr1:186197290..186199226,2	K562	blood:
5	chr1:186050014..186052518-chr1:186058903..186060549,2	K562	blood:
6	chr1:186042846..186047745-chr1:186049969..186053371,5	K562	blood:

Extended variants
information (count: 94 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs10157742	0.96[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap];0.95[MEX][hapmap];0.83[ASN][1000 genomes]
rs10157924	0.96[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap];0.80[TSI][hapmap];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1022670	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1022671	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10489755	0.86[CHD][hapmap]
rs10489756	0.83[CHB][hapmap];0.90[CHD][hapmap];0.91[JPT][hapmap]
rs10737266	0.82[JPT][hapmap]
rs10752960	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10752961	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10798030	0.82[JPT][hapmap]
rs10798033	0.82[JPT][hapmap]
rs10798036	0.96[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.87[JPT][hapmap];0.95[MEX][hapmap];0.83[TSI][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10911810	0.85[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap];0.90[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10911811	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10911812	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10911813	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.87[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.83[TSI][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10911814	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10911815	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10911816	0.96[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.87[JPT][hapmap];0.95[MEX][hapmap];0.81[TSI][hapmap];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10911819	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10911820	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10911825	0.83[CHB][hapmap];0.85[CHD][hapmap];0.86[JPT][hapmap]
rs12061689	0.86[CHD][hapmap]
rs12078939	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12080760	0.86[CHD][hapmap];0.91[JPT][hapmap]
rs12129650	0.81[CHB][hapmap];0.81[CHD][hapmap];0.82[JPT][hapmap];0.80[ASN][1000 genomes]
rs12565788	0.83[CHB][hapmap];0.85[CHD][hapmap];0.87[JPT][hapmap]
rs1322374	0.81[CHD][hapmap];0.91[JPT][hapmap]
rs1555495	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1590273	0.96[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs1830627	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1853249	0.96[CEU][hapmap];0.94[CHB][hapmap];0.85[JPT][hapmap];0.89[ASN][1000 genomes]
rs1923460	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1998088	0.89[ASN][1000 genomes]
rs2038601	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2064789	0.88[ASN][1000 genomes]
rs2064790	0.92[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2073308	0.96[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2146098	0.83[CHB][hapmap];0.85[CHD][hapmap];0.87[JPT][hapmap]
rs2180480	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2224276	0.82[JPT][hapmap]
rs2224575	0.83[CHD][hapmap];0.82[JPT][hapmap]
rs2383430	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2383431	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2383432	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2383433	0.96[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2891228	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2891229	0.96[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2891230	0.82[CHD][hapmap];0.87[JPT][hapmap]
rs3737941	0.81[CHD][hapmap]
rs4233125	0.96[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.87[ASN][1000 genomes]
rs4650695	0.86[CHD][hapmap];0.91[JPT][hapmap]
rs4651292	0.81[JPT][hapmap]
rs4651295	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4651297	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4651298	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.87[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.81[TSI][hapmap];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4651299	0.96[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap];0.95[MEX][hapmap];0.84[ASN][1000 genomes]
rs4651302	0.83[CHD][hapmap];0.81[JPT][hapmap]
rs6425014	0.82[JPT][hapmap]
rs6425015	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6425016	0.96[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.81[TSI][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6425017	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.81[TSI][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6664918	0.86[CHD][hapmap]
rs6673390	0.86[JPT][hapmap]
rs6687977	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6689111	0.95[JPT][hapmap]
rs6701244	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6703518	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs716755	0.92[CEU][hapmap];0.94[CHB][hapmap];0.84[JPT][hapmap];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs716756	0.96[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap];0.90[MEX][hapmap];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs720971	0.96[CEU][hapmap];0.90[CHB][hapmap];0.90[CHD][hapmap];0.80[JPT][hapmap];0.95[MEX][hapmap];0.81[TSI][hapmap];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs720972	0.96[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.87[JPT][hapmap];0.94[MEX][hapmap];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs721153	0.83[CHB][hapmap];0.88[CHD][hapmap];0.91[JPT][hapmap]
rs743136	0.82[JPT][hapmap]
rs7511761	0.96[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs7520459	0.82[JPT][hapmap]
rs7527490	0.96[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.87[JPT][hapmap];0.95[MEX][hapmap];0.81[TSI][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7530133	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7541013	0.82[JPT][hapmap]
rs7543494	0.82[ASN][1000 genomes]
rs7545010	0.85[CHB][hapmap];0.83[CHD][hapmap]
rs7549552	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs7550425	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7552781	0.84[ASN][1000 genomes]
rs7555520	0.96[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.86[JPT][hapmap];0.94[MEX][hapmap];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7555906	0.96[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap];0.95[MEX][hapmap];0.84[ASN][1000 genomes]
rs761903	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs761904	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs761905	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9286859	0.83[CHB][hapmap];0.85[CHD][hapmap];0.81[JPT][hapmap]
rs9286860	0.83[CHB][hapmap];0.88[CHD][hapmap]
rs970578	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs975398	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3424090	chr1:185679718-186270877	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:186009400-186078000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr1:186013600-186068400	Weak transcription	Fetal Kidney	kidney
3	chr1:186020000-186062600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr1:186024800-186051400	Weak transcription	Left Ventricle	heart
5	chr1:186037800-186051200	Weak transcription	Liver	Liver
6	chr1:186039600-186053800	Weak transcription	Adipose Nuclei	Adipose
7	chr1:186040200-186064400	Weak transcription	Lung	lung
8	chr1:186045800-186051000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr1:186046400-186135200	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr1:186047800-186057200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr1:186048000-186051200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr1:186048200-186050600	Weak transcription	NHDF-Ad	bronchial
13	chr1:186048400-186051400	Weak transcription	GM12878-XiMat	blood
14	chr1:186048400-186062400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr1:186048600-186050800	Weak transcription	Fetal Stomach	stomach
16	chr1:186048600-186051400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr1:186048800-186051000	Weak transcription	Hela-S3	cervix
18	chr1:186048800-186051400	Weak transcription	Fetal Lung	lung
19	chr1:186049200-186051000	Weak transcription	NHEK	skin
20	chr1:186049200-186051400	Weak transcription	Aorta	Aorta
21	chr1:186049200-186051400	Weak transcription	Esophagus	oesophagus
22	chr1:186049200-186059600	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr1:186049800-186051200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr1:186050000-186052200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr1:186050200-186050600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr1:186050200-186051200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr1:186050200-186051800	Enhancers	Muscle Satellite Cultured Cells	--
28	chr1:186050200-186052200	Enhancers	K562	blood
29	chr1:186050400-186052200	Enhancers	Fetal Intestine Large	intestine
30	chr1:186050400-186062600	Weak transcription	HUES64 Cell Line	embryonic stem cell

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