Variant report

Variant	rs10798255
Chromosome Location	chr1:173043251-173043252
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10798261	0.81[AMR][1000 genomes]
rs11583787	0.80[EUR][1000 genomes]
rs11583801	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12060864	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12075195	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12118211	1.00[ASN][1000 genomes]
rs12134570	0.81[AMR][1000 genomes]
rs12142166	1.00[ASN][1000 genomes]
rs12757847	0.84[AMR][1000 genomes]
rs2223517	0.96[EUR][1000 genomes]
rs59105298	0.86[EUR][1000 genomes]
rs6699806	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs720455	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7515451	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs975074	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs997331	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831904	chr1:172912110-173070429	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv533953	chr1:172939335-173133255	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173043000-173043800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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