Variant report
| Variant | rs10799281 |
|---|---|
| Chromosome Location | chr1:225079770-225079771 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| DNAH14 | TF binding region |
rSNPs within LD-proxies of this variant (count:3)
| rs_ID | r2[population] |
|---|---|
| rs2449285 | 1.00[GIH][hapmap];0.87[MKK][hapmap];0.81[TSI][hapmap] |
| rs2456337 | 1.00[GIH][hapmap];1.00[MKK][hapmap] |
| rs2489320 | 0.94[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv16888 | chr1:225075528-225081091 | Inactive region | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
mRNA abundance (count:3)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs10799281 | LOC646982 | trans | parietal | SCAN |
| rs10799281 | DUSP10 | cis | cerebellum | SCAN |
| rs10799281 | FBXO28 | cis | parietal | SCAN |
Chromatin state (count:0 , 50 per page) page:
| No data |
