The 2.0 version of rSNPBase

Variant report

Variant rs10799306
Chromosome Location chr1:225596164-225596165
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:126 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:225570800-225600000 Weak transcription HSMMtube muscle
2 chr1:225578000-225597800 Weak transcription Brain Cingulate Gyrus brain
3 chr1:225578000-225599200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
4 chr1:225580800-225599200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
5 chr1:225581600-225596200 Weak transcription iPS-15b Cell Line embryonic stem cell
6 chr1:225582000-225597800 Weak transcription Brain Anterior Caudate brain
7 chr1:225582200-225610400 Strong transcription Fetal Thymus thymus
8 chr1:225582600-225597800 Weak transcription Fetal Brain Male brain
9 chr1:225583200-225597800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
10 chr1:225583400-225598000 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
11 chr1:225583400-225601600 Strong transcription Primary monocytes fromperipheralblood blood
12 chr1:225583400-225601600 Strong transcription Monocytes-CD14+_RO01746 blood
13 chr1:225583400-225601800 Strong transcription Primary Natural Killer cells fromperipheralblood blood
14 chr1:225583600-225597800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
15 chr1:225583600-225602200 Weak transcription Placenta Amnion Placenta Amnion
16 chr1:225583800-225597800 Weak transcription Brain Inferior Temporal Lobe brain
17 chr1:225583800-225601600 Strong transcription Primary B cells from cord blood blood
18 chr1:225584000-225603800 Weak transcription Psoas Muscle Psoas
19 chr1:225584200-225610600 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
20 chr1:225584400-225600600 Weak transcription Stomach Mucosa stomach
21 chr1:225584800-225609800 Strong transcription Dnd41 blood
22 chr1:225584800-225610400 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
23 chr1:225585000-225609800 Strong transcription Primary hematopoietic stem cells short term culture blood
24 chr1:225585000-225609800 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
25 chr1:225585000-225609800 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
26 chr1:225585000-225610400 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
27 chr1:225585200-225609800 Strong transcription Primary T helper cells fromperipheralblood blood
28 chr1:225585800-225610000 Strong transcription Primary T regulatory cells fromperipheralblood blood
29 chr1:225585800-225610000 Strong transcription K562 blood
30 chr1:225585800-225610400 Strong transcription Primary T cells fromperipheralblood blood
31 chr1:225586000-225601400 Strong transcription Primary B cells from peripheral blood blood
32 chr1:225586000-225607000 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
33 chr1:225587000-225601000 Weak transcription ES-WA7 Cell Line embryonic stem cell
34 chr1:225587400-225598200 Weak transcription Fetal Heart heart
35 chr1:225587600-225596200 Strong transcription HUES6 Cell Line embryonic stem cell
36 chr1:225587600-225607000 Strong transcription Primary T helper 17 cells PMA-I stimulated --
37 chr1:225587600-225607800 Strong transcription Cortex derived primary cultured neurospheres brain
38 chr1:225587800-225596400 Strong transcription GM12878-XiMat blood
39 chr1:225587800-225610000 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
40 chr1:225588200-225600600 Strong transcription Rectal Mucosa Donor 31 rectum
41 chr1:225588200-225605400 Strong transcription Rectal Mucosa Donor 29 rectum
42 chr1:225588200-225608200 Strong transcription Primary T helper naive cells fromperipheralblood blood
43 chr1:225588200-225610200 Strong transcription Osteobl bone
44 chr1:225588400-225604200 Strong transcription HUVEC blood vessel
45 chr1:225588600-225608400 Strong transcription Hela-S3 cervix
46 chr1:225588600-225609800 Strong transcription Primary T helper cells PMA-I stimulated --
47 chr1:225589000-225597800 Weak transcription Right Ventricle heart
48 chr1:225589000-225607400 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
49 chr1:225589200-225597800 Weak transcription Skeletal Muscle Male skeletal muscle
50 chr1:225589200-225599200 Weak transcription Small Intestine intestine

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Last update: Aug 31, 2015