Variant report
| Variant | rs10800138 |
|---|---|
| Chromosome Location | chr1:165682054-165682055 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:5 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:165680330..165683090-chr1:165859945..165862839,2 | K562 | blood: | |
| 2 | chr1:165675457..165677242-chr1:165679704..165682648,2 | K562 | blood: | |
| 3 | chr1:165677856..165680745-chr1:165681004..165683770,2 | K562 | blood: | |
| 4 | chr1:165667520..165669276-chr1:165679917..165682478,2 | K562 | blood: | |
| 5 | chr1:165680183..165682740-chr1:165693137..165696252,3 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000215838 | Chromatin interaction |
| ENSG00000273365 | Chromatin interaction |
| ENSG00000143179 | Chromatin interaction |
| ENSG00000143149 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:7)
| rs_ID | r2[population] |
|---|---|
| rs10800139 | 0.84[YRI][hapmap] |
| rs10918255 | 1.00[CEU][hapmap];0.88[EUR][1000 genomes] |
| rs12076579 | 1.00[CHB][hapmap] |
| rs12143472 | 1.00[CEU][hapmap];0.88[EUR][1000 genomes] |
| rs16849374 | 1.00[CHB][hapmap] |
| rs4341347 | 1.00[CEU][hapmap];0.95[EUR][1000 genomes] |
| rs4657469 | 0.88[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2756102 | chr1:165652342-165877342 | Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 48 gene(s) | inside rSNPs | diseases |
| 2 | nsv1011720 | chr1:165669589-165802516 | Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 41 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
