Variant report

Variant	rs10800162
Chromosome Location	chr1:165822176-165822177
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:165822136..165824706-chr1:165825180..165827276,2	K562	blood:
2	chr1:165804707..165808619-chr1:165822123..165824856,3	K562	blood:
3	chr1:165822075..165824045-chr1:165844384..165846604,2	K562	blood:
4	chr1:165818712..165822734-chr1:165823086..165826851,4	MCF-7	breast:
5	chr1:165804707..165809840-chr1:165822123..165825220,4	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10737519	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10753694	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10918291	0.95[CHB][hapmap];0.84[JPT][hapmap];0.86[ASN][1000 genomes]
rs10918294	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11590711	0.89[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12041574	0.87[CHB][hapmap]
rs1934275	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2185268	1.00[CHB][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs34800847	0.93[ASN][1000 genomes]
rs4483381	0.96[CHB][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs4535982	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4548416	1.00[CHB][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs4657481	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6426941	1.00[CHB][hapmap];0.87[JPT][hapmap];0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6677965	1.00[CHB][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs6678380	1.00[CHB][hapmap];0.88[JPT][hapmap];0.91[ASN][1000 genomes]
rs6682894	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6684773	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6686237	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6690966	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6702462	1.00[CHB][hapmap];0.87[JPT][hapmap];0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7517175	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7539793	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756102	chr1:165652342-165877342	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	esv2830094	chr1:165785503-165840411	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	31 gene(s)	inside rSNPs	diseases
3	nsv548097	chr1:165797966-165825166	Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	23 gene(s)	inside rSNPs	diseases
4	esv2755529	chr1:165813862-165858354	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165812200-165823200	Weak transcription	Aorta	Aorta
2	chr1:165812200-165823200	Weak transcription	Fetal Stomach	stomach
3	chr1:165812200-165823400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr1:165812400-165822200	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr1:165812400-165823200	Weak transcription	Left Ventricle	heart
6	chr1:165812400-165823200	Weak transcription	Right Ventricle	heart
7	chr1:165812400-165823200	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr1:165813000-165823200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr1:165814000-165823200	Weak transcription	Small Intestine	intestine
10	chr1:165816200-165825000	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr1:165817600-165823800	Enhancers	Fetal Thymus	thymus
12	chr1:165818000-165829200	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr1:165818400-165823800	Enhancers	Thymus	Thymus
14	chr1:165818600-165823200	Weak transcription	Fetal Muscle Leg	muscle
15	chr1:165818600-165828000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr1:165818800-165823400	Weak transcription	Right Atrium	heart
17	chr1:165818800-165824800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr1:165818800-165826600	Weak transcription	Esophagus	oesophagus
19	chr1:165819000-165823200	Weak transcription	Adipose Nuclei	Adipose
20	chr1:165819000-165826000	Weak transcription	Brain Hippocampus Middle	brain
21	chr1:165819000-165826200	Weak transcription	Stomach Mucosa	stomach
22	chr1:165819200-165823000	Weak transcription	Hela-S3	cervix
23	chr1:165819200-165824600	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr1:165819200-165824800	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr1:165819400-165822400	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr1:165819600-165824400	Enhancers	HMEC	breast
27	chr1:165820200-165822200	Enhancers	Primary hematopoietic stem cells	blood
28	chr1:165820200-165822400	Enhancers	Psoas Muscle	Psoas
29	chr1:165820200-165825800	Enhancers	iPS-20b Cell Line	embryonic stem cell
30	chr1:165820400-165822400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
31	chr1:165820400-165825200	Enhancers	Fetal Heart	heart
32	chr1:165820400-165827600	Enhancers	iPS-18 Cell Line	embryonic stem cell
33	chr1:165820600-165822600	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr1:165820600-165823200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr1:165820600-165823200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr1:165820600-165823200	Weak transcription	Fetal Intestine Small	intestine
37	chr1:165820800-165822600	Weak transcription	NH-A	brain
38	chr1:165820800-165823000	Weak transcription	Primary neutrophils fromperipheralblood	blood
39	chr1:165820800-165823200	Weak transcription	Placenta	Placenta
40	chr1:165820800-165823200	Weak transcription	Gastric	stomach
41	chr1:165820800-165823200	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr1:165820800-165824800	Weak transcription	Duodenum Mucosa	Duodenum
43	chr1:165820800-165828000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr1:165821000-165822200	Weak transcription	Primary B cells from cord blood	blood
45	chr1:165821000-165822200	Weak transcription	Muscle Satellite Cultured Cells	--
46	chr1:165821000-165822800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr1:165821000-165822800	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chr1:165821000-165823200	Weak transcription	Primary B cells from peripheral blood	blood
49	chr1:165821000-165823200	Weak transcription	Primary T cells fromperipheralblood	blood
50	chr1:165821000-165823200	Enhancers	Primary hematopoietic stem cells short term culture	blood

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