Variant report

Variant	rs10800396
Chromosome Location	chr1:168888072-168888073
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:168887188..168892256-chr1:169072302..169079040,8	MCF-7	breast:
2	chr1:168881835..168884881-chr1:168885530..168888220,3	MCF-7	breast:
3	chr1:168875686..168878179-chr1:168887956..168889828,4	MCF-7	breast:
4	chr1:168881969..168885467-chr1:168887830..168890604,3	K562	blood:

Variant related genes	Relation type
ENSG00000237707	Chromatin interaction
ENSG00000143153	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10737544	0.95[ASN][1000 genomes]
rs10919019	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12128029	0.96[ASN][1000 genomes]
rs1407478	0.95[ASN][1000 genomes]
rs1407481	0.81[ASN][1000 genomes]
rs2900884	0.85[ASN][1000 genomes]
rs4656169	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4656625	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4656626	0.86[ASN][1000 genomes]
rs4656627	0.85[ASN][1000 genomes]
rs4656628	0.85[ASN][1000 genomes]
rs6427161	0.95[ASN][1000 genomes]
rs6692447	0.95[ASN][1000 genomes]
rs67169143	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869415	chr1:168467284-169153863	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
2	nsv437258	chr1:168824111-168890420	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:168879200-168890400	Weak transcription	Aorta	Aorta
2	chr1:168883400-168888200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr1:168884000-168888200	Weak transcription	Brain Germinal Matrix	brain
4	chr1:168884400-168889800	Weak transcription	Psoas Muscle	Psoas
5	chr1:168885600-168888200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr1:168886200-168890600	Enhancers	HMEC	breast
7	chr1:168886400-168888600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr1:168886400-168889000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr1:168886400-168889400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr1:168886400-168889600	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr1:168886600-168888800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr1:168886600-168889000	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr1:168886600-168889400	Enhancers	H1 Cell Line	embryonic stem cell
14	chr1:168886800-168888200	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr1:168886800-168888200	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr1:168886800-168889200	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr1:168886800-168889200	Enhancers	Brain Anterior Caudate	brain
18	chr1:168886800-168890200	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr1:168886800-168890400	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr1:168887000-168888200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr1:168887000-168889000	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr1:168887200-168888400	Enhancers	Fetal Kidney	kidney
23	chr1:168887200-168888600	Enhancers	HUES48 Cell Line	embryonic stem cell
24	chr1:168887200-168888800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr1:168887200-168888800	Enhancers	Brain Hippocampus Middle	brain
26	chr1:168887200-168891400	Enhancers	Adipose Nuclei	Adipose
27	chr1:168887400-168888200	Enhancers	Brain Cingulate Gyrus	brain
28	chr1:168887400-168888400	Enhancers	H9 Cell Line	embryonic stem cell
29	chr1:168887400-168888800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
30	chr1:168887400-168889200	Weak transcription	Fetal Lung	lung
31	chr1:168887400-168889600	Enhancers	Brain Substantia Nigra	brain
32	chr1:168887600-168888200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
33	chr1:168887600-168888400	Enhancers	Pancreas	Pancrea
34	chr1:168887600-168889200	Weak transcription	Fetal Stomach	stomach
35	chr1:168887600-168889200	Weak transcription	Left Ventricle	heart
36	chr1:168887600-168889400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr1:168887800-168889800	Enhancers	HUVEC	blood vessel
38	chr1:168887800-168890400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr1:168887800-168891800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
40	chr1:168887800-168893400	Enhancers	HepG2	liver
41	chr1:168888000-168888600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr1:168888000-168889400	Enhancers	A549	lung
43	chr1:168888000-168891800	Enhancers	Stomach Mucosa	stomach

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