Variant report

Variant	rs10800499
Chromosome Location	chr1:170105319-170105320
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10800498	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10800500	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10800502	0.81[AMR][1000 genomes]
rs10919306	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10919309	0.81[AMR][1000 genomes]
rs10919312	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11584673	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12032210	0.83[ASN][1000 genomes]
rs12036604	0.83[ASN][1000 genomes]
rs12038006	0.83[ASN][1000 genomes]
rs12039362	0.83[ASN][1000 genomes]
rs12569092	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12751063	0.81[AMR][1000 genomes]
rs35081369	0.81[AMR][1000 genomes]
rs4332407	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs550575	0.81[AMR][1000 genomes]
rs6427234	0.81[AMR][1000 genomes]
rs6427235	0.81[AMR][1000 genomes]
rs6669514	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs979347	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014033	chr1:169968488-170453021	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
2	nsv535200	chr1:169968488-170453021	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	nsv999310	chr1:170065943-170223350	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:170104200-170107800	Weak transcription	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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