Variant report

Variant	rs10803920
Chromosome Location	chr2:179728163-179728164
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:179726925..179728501-chr2:179728978..179731077,2	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10165177	0.86[CEU][hapmap];0.94[YRI][hapmap];0.95[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs10497526	1.00[JPT][hapmap]
rs11884950	0.95[EUR][1000 genomes]
rs12469367	1.00[CHB][hapmap]
rs12693171	0.93[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes]
rs1489483	1.00[JPT][hapmap]
rs1489486	1.00[JPT][hapmap]
rs1565287	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4637162	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4894054	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs4894055	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4894057	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4894060	0.93[EUR][1000 genomes]
rs56345539	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6433738	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6707222	0.93[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes]
rs6734390	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6747791	1.00[JPT][hapmap]
rs7570928	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7573700	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834470	chr2:179555152-179728726	Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv934108	chr2:179556852-179729925	Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv949133	chr2:179711376-180124327	Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:179695800-179738400	Weak transcription	Fetal Intestine Large	intestine
2	chr2:179696400-179728800	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr2:179702200-179749200	Weak transcription	Thymus	Thymus
4	chr2:179702400-179729200	Weak transcription	Lung	lung
5	chr2:179702400-179730000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr2:179702800-179728600	Weak transcription	Pancreas	Pancrea
7	chr2:179710800-179782800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr2:179711600-179728400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr2:179713400-179729200	Weak transcription	Primary B cells from peripheral blood	blood
10	chr2:179713400-179778600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr2:179717000-179790600	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr2:179718200-179728600	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr2:179718200-179728800	Weak transcription	Primary B cells from cord blood	blood
14	chr2:179718400-179728400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr2:179722400-179728800	Weak transcription	Aorta	Aorta
16	chr2:179724200-179729600	Weak transcription	Brain Substantia Nigra	brain
17	chr2:179724200-179730400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr2:179724400-179728600	Weak transcription	Ovary	ovary
19	chr2:179724600-179733400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr2:179724800-179728600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr2:179724800-179728600	Weak transcription	Rectal Smooth Muscle	rectum
22	chr2:179724800-179729000	Weak transcription	Brain Anterior Caudate	brain
23	chr2:179724800-179730000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr2:179724800-179732800	Weak transcription	Brain Angular Gyrus	brain
25	chr2:179725800-179729200	Weak transcription	Brain Hippocampus Middle	brain
26	chr2:179726000-179728200	Weak transcription	Colon Smooth Muscle	Colon
27	chr2:179726000-179728400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr2:179726200-179728600	Weak transcription	Fetal Stomach	stomach
29	chr2:179726200-179730400	Weak transcription	Fetal Brain Male	brain
30	chr2:179726400-179728600	Weak transcription	Fetal Muscle Trunk	muscle
31	chr2:179726400-179733400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr2:179726800-179728800	Weak transcription	Left Ventricle	heart
33	chr2:179726800-179729800	Enhancers	iPS-18 Cell Line	embryonic stem cell
34	chr2:179727000-179729600	Enhancers	iPS-15b Cell Line	embryonic stem cell
35	chr2:179727800-179728200	Flanking Active TSS	Fetal Heart	heart
36	chr2:179727800-179728200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
37	chr2:179727800-179728200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
38	chr2:179727800-179728200	Enhancers	NHLF	lung
39	chr2:179727800-179728400	Enhancers	Fetal Muscle Leg	muscle
40	chr2:179727800-179728400	Enhancers	HSMMtube	muscle
41	chr2:179727800-179728800	Active TSS	Psoas Muscle	Psoas
42	chr2:179727800-179728800	Enhancers	GM12878-XiMat	blood
43	chr2:179727800-179729000	Enhancers	HSMM	muscle
44	chr2:179727800-179729400	Enhancers	Fetal Lung	lung
45	chr2:179727800-179730600	Enhancers	HUVEC	blood vessel
46	chr2:179727800-179730800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
47	chr2:179727800-179730800	Enhancers	NHDF-Ad	bronchial
48	chr2:179727800-179731200	Strong transcription	Primary T cells from cord blood	blood
49	chr2:179728000-179728200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr2:179728000-179728400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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