Variant report

Variant	rs10804673
Chromosome Location	chr3:140092502-140092503
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10212107	0.86[AFR][1000 genomes]
rs10212135	0.86[AFR][1000 genomes]
rs10212140	0.86[AFR][1000 genomes]
rs10804672	0.86[AFR][1000 genomes]
rs1159437	0.90[AFR][1000 genomes]
rs11916924	0.90[AFR][1000 genomes]
rs11927470	0.86[AFR][1000 genomes]
rs13088193	0.90[AFR][1000 genomes]
rs1319583	0.90[AFR][1000 genomes]
rs1383017	0.84[AFR][1000 genomes]
rs1479853	0.90[AFR][1000 genomes]
rs1479854	0.86[AFR][1000 genomes]
rs1479855	0.86[AFR][1000 genomes]
rs1479858	0.88[AFR][1000 genomes]
rs1479859	0.88[AFR][1000 genomes]
rs1479860	0.88[AFR][1000 genomes]
rs1585817	0.86[AFR][1000 genomes]
rs1600401	0.90[AFR][1000 genomes]
rs1904486	0.90[AFR][1000 genomes]
rs1993960	0.86[AFR][1000 genomes]
rs1993961	0.88[AFR][1000 genomes]
rs2127471	0.86[AFR][1000 genomes]
rs2127472	0.90[AFR][1000 genomes]
rs3903534	0.86[AFR][1000 genomes]
rs3943278	0.90[AFR][1000 genomes]
rs4368463	0.88[AFR][1000 genomes]
rs4393867	0.86[AFR][1000 genomes]
rs4589894	0.88[AFR][1000 genomes]
rs4638925	0.86[AFR][1000 genomes]
rs4683827	0.88[AFR][1000 genomes]
rs4683828	0.88[AFR][1000 genomes]
rs6769574	0.88[AFR][1000 genomes]
rs6797439	0.90[AFR][1000 genomes]
rs6804095	0.90[AFR][1000 genomes]
rs899624	0.84[AFR][1000 genomes]
rs931123	0.86[AFR][1000 genomes]
rs931124	0.89[AFR][1000 genomes]
rs931125	0.86[AFR][1000 genomes]
rs931126	0.86[AFR][1000 genomes]
rs9877035	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757891	chr3:139925764-140524730	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	esv2759181	chr3:139925764-140524730	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv829740	chr3:139925767-140106169	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv527831	chr3:139932966-140533823	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv460867	chr3:140007294-140180563	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv591861	chr3:140007294-140180563	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	esv34489	chr3:140009020-140469302	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	esv2757012	chr3:140009220-140460228	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
9	nsv818169	chr3:140014763-140182046	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv1001430	chr3:140016999-140186498	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	nsv998953	chr3:140017168-140186984	Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
12	nsv536731	chr3:140017168-140186984	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
13	nsv829741	chr3:140021063-140183294	Enhancers Genic enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
14	nsv1004500	chr3:140021594-140189148	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140085600-140097200	Weak transcription	HSMMtube	muscle
2	chr3:140087600-140104600	Weak transcription	Brain Angular Gyrus	brain
3	chr3:140090000-140105400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:140092000-140092600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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