Variant report

Variant	rs10805607
Chromosome Location	chr5:35679758-35679759
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:35673549..35675188-chr5:35678756..35681423,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs13179014	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2172754	0.85[ASN][1000 genomes]
rs6872795	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525477	chr5:35530905-35792990	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv880510	chr5:35659239-35709184	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv881146	chr5:35659239-35714851	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv1843371	chr5:35668036-35706279	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35630600-35707600	Weak transcription	Pancreas	Pancrea
2	chr5:35672000-35708600	Weak transcription	Gastric	stomach
3	chr5:35673600-35693400	Weak transcription	Brain Anterior Caudate	brain
4	chr5:35673600-35694600	Weak transcription	Brain Angular Gyrus	brain
5	chr5:35674800-35682800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr5:35678000-35679800	Enhancers	Left Ventricle	heart
7	chr5:35678400-35679800	Enhancers	Lung	lung
8	chr5:35678600-35680000	Enhancers	Fetal Thymus	thymus
9	chr5:35678800-35679800	Weak transcription	Psoas Muscle	Psoas
10	chr5:35678800-35680000	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr5:35679000-35680000	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr5:35679000-35681000	Enhancers	Primary T cells from cord blood	blood
13	chr5:35679200-35679800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr5:35679200-35679800	Enhancers	Right Atrium	heart
15	chr5:35679200-35680000	Enhancers	Primary T cells fromperipheralblood	blood
16	chr5:35679200-35680000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr5:35679200-35680000	Enhancers	Primary T helper naive cells from peripheral blood	blood
18	chr5:35679200-35680000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
19	chr5:35679200-35680000	Enhancers	Dnd41	blood
20	chr5:35679400-35679800	Enhancers	Brain Cingulate Gyrus	brain
21	chr5:35679400-35679800	Enhancers	Brain Hippocampus Middle	brain
22	chr5:35679400-35680000	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr5:35679400-35680000	Enhancers	Primary T helper cells fromperipheralblood	blood
24	chr5:35679400-35680000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
25	chr5:35679400-35680000	Enhancers	Thymus	Thymus

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