Variant report

Variant	rs10805624
Chromosome Location	chr5:36590469-36590470
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1030486	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10461972	0.94[ASN][1000 genomes]
rs11745644	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12173139	1.00[AFR][1000 genomes]
rs13359788	0.94[ASN][1000 genomes]
rs2364216	0.97[ASN][1000 genomes]
rs2562556	0.94[ASN][1000 genomes]
rs6451301	0.94[ASN][1000 genomes]
rs72732512	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492319	chr5:36570707-37061019	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv881025	chr5:36575021-36613053	Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
3	nsv830263	chr5:36576504-36755093	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv980637	chr5:36588834-36590502	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36584800-36590800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr5:36585200-36590600	Weak transcription	Brain Anterior Caudate	brain
3	chr5:36585400-36590800	Weak transcription	Brain Cingulate Gyrus	brain
4	chr5:36586200-36590600	Weak transcription	Brain Substantia Nigra	brain
5	chr5:36586200-36590800	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr5:36587800-36591400	Weak transcription	Left Ventricle	heart
7	chr5:36588000-36590600	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr5:36589600-36591600	Weak transcription	Right Atrium	heart
9	chr5:36590400-36590800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr5:36590400-36591800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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