Variant report
| Variant | rs10806334 |
|---|---|
| Chromosome Location | chr6:86439329-86439330 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No data |
| No data |
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| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000217334 | TF binding region |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10944136 | 0.88[ASN][1000 genomes] |
| rs1173417 | 0.83[EUR][1000 genomes] |
| rs12190603 | 0.88[ASN][1000 genomes] |
| rs12212560 | 0.80[EUR][1000 genomes] |
| rs13207173 | 0.86[ASN][1000 genomes] |
| rs13213603 | 0.80[ASN][1000 genomes] |
| rs1470531 | 0.80[ASN][1000 genomes] |
| rs2324817 | 0.81[AFR][1000 genomes];0.86[ASN][1000 genomes] |
| rs34795473 | 0.86[ASN][1000 genomes] |
| rs4098044 | 0.86[ASN][1000 genomes] |
| rs4383777 | 0.83[ASN][1000 genomes] |
| rs4707223 | 0.81[ASN][1000 genomes] |
| rs6454486 | 0.81[ASN][1000 genomes] |
| rs6454487 | 0.82[AFR][1000 genomes];0.91[ASN][1000 genomes] |
| rs6454488 | 0.82[AFR][1000 genomes];0.86[ASN][1000 genomes] |
| rs66807489 | 0.91[ASN][1000 genomes] |
| rs6900436 | 0.81[ASN][1000 genomes] |
| rs7752502 | 0.84[EUR][1000 genomes] |
| rs7757864 | 0.82[EUR][1000 genomes] |
| rs7762321 | 0.84[EUR][1000 genomes] |
| rs9342046 | 0.83[ASN][1000 genomes] |
| rs9362239 | 0.81[ASN][1000 genomes] |
| rs9450318 | 0.83[ASN][1000 genomes] |
| rs9450319 | 0.82[ASN][1000 genomes] |
| rs9647601 | 0.89[AFR][1000 genomes];0.88[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1028293 | chr6:86353958-86778912 | Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 100 gene(s) | inside rSNPs | diseases |
| 2 | nsv538350 | chr6:86353958-86778912 | Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 100 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:14)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs10806334 | SNHG5 | cis | Nerve Tibial | GTEx |
| rs10806334 | SNHG5 | cis | Muscle Skeletal | GTEx |
| rs10806334 | SNHG5 | cis | Whole Blood | GTEx |
| rs10806334 | SNHG5 | cis | Artery Tibial | GTEx |
| rs10806334 | SNHG5 | cis | lung | GTEx |
| rs10806334 | SNHG5 | cis | Esophagus Mucosa | GTEx |
| rs10806334 | SNHG5 | cis | Skin Sun Exposed Lower leg | GTEx |
| rs10806334 | SNHG5 | cis | Artery Aorta | GTEx |
| rs10806334 | SNHG5 | cis | Thyroid | GTEx |
| rs10806334 | SNHG5 | Cis_1M | lymphoblastoid | RTeQTL |
| rs10806334 | SNHG5 | cis | multi-tissue | Pritchard |
| rs10806334 | SNHG5 | cis | Heart Left Ventricle | GTEx |
| rs10806334 | SNHG5 | cis | Adipose Subcutaneous | GTEx |
| rs10806334 | SNHG5 | cis | Esophagus Muscularis | GTEx |
Chromatin state (count:0 , 50 per page) page:
| No data |
