Variant report

Variant	rs10806445
Chromosome Location	chr6:92176663-92176664
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10806444	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2249927	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2655640	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2655641	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2655647	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2655648	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2748283	0.84[EUR][1000 genomes]
rs2748285	0.84[EUR][1000 genomes]
rs2818290	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3924965	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4142617	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4142619	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4142620	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4142624	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4235848	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4262163	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4277986	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4291077	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4321804	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4419648	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4490641	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4557492	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4707673	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4707674	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6918030	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6918571	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7739576	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7757034	0.83[EUR][1000 genomes]
rs7767518	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9283811	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9294497	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9294500	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9294501	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9294502	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9294503	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9345138	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9353833	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9353835	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9353841	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752130	chr6:91740447-92196479	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1017467	chr6:91802015-92417554	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
3	nsv538360	chr6:91802015-92417554	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1025913	chr6:92103872-92258396	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
5	nsv538361	chr6:92103872-92258396	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1024381	chr6:92169962-92194575	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:92176600-92176800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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