Variant report

Variant	rs10806988
Chromosome Location	chr6:24341769-24341770
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:24339917..24341948-chr6:24355684..24358710,3	MCF-7	breast:
2	chr6:24341482..24343826-chr6:24359222..24360846,2	MCF-7	breast:
3	chr6:24341614..24344707-chr6:24345325..24348504,3	MCF-7	breast:
4	chr6:24339050..24344227-chr6:24347020..24349931,5	MCF-7	breast:
5	chr6:24338936..24342390-chr6:24350898..24353843,3	MCF-7	breast:
6	chr6:24340134..24343269-chr6:24348514..24352207,3	MCF-7	breast:
7	chr6:24333030..24335051-chr6:24339193..24343115,3	MCF-7	breast:
8	chr6:24341268..24343493-chr6:24355981..24357626,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 1 )
Associated
traits (count: 18 )

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs4052662	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:18)

SNP	Gene	Cis/trans	Tissue	Source
rs10806988	MPP3	trans	brain	seeQTL
rs10806988	LDLRAP1	trans	brain	seeQTL
rs10806988	TSPAN18	trans	brain	seeQTL
rs10806988	LHX1	trans	brain	seeQTL
rs10806988	PKIB	trans	brain	seeQTL
rs10806988	PLGLB2	trans	brain	seeQTL
rs10806988	HS3ST1	trans	brain	seeQTL
rs10806988	NRIP2	trans	brain	seeQTL
rs10806988	EOMES	trans	brain	seeQTL
rs10806988	CMAH	cis	parietal	SCAN
rs10806988	HIST1H3C	cis	parietal	SCAN
rs10806988	CRTAM	trans	brain	seeQTL
rs10806988	SMC1A	trans	brain	seeQTL
rs10806988	MAB21L1	trans	brain	seeQTL
rs10806988	FRA10AC1	trans	cerebellum	SCAN
rs10806988	CBLN1	trans	brain	seeQTL
rs10806988	HIST1H2AM	cis	cerebellum	SCAN
rs10806988	EXPH5	trans	brain	seeQTL

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24339600-24355600	Weak transcription	Pancreas	Pancrea
2	chr6:24340800-24341800	Enhancers	HepG2	liver
3	chr6:24341000-24342600	Enhancers	Liver	Liver
4	chr6:24341200-24342000	Active TSS	A549	lung
5	chr6:24341200-24342600	Enhancers	Fetal Kidney	kidney
6	chr6:24341200-24357600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:24341400-24346200	Weak transcription	Fetal Intestine Small	intestine

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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