Variant report

Variant	rs10807300
Chromosome Location	chr6:44384101-44384102
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:44356556..44360481-chr6:44380097..44385414,6	K562	blood:
2	chr6:44356394..44359367-chr6:44380277..44384190,3	K562	blood:
3	chr6:44365878..44368641-chr6:44383402..44385534,2	K562	blood:
4	chr6:44382268..44386801-chr6:44387364..44390498,4	MCF-7	breast:
5	chr6:44371835..44373897-chr6:44382894..44384925,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1293205	1.00[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1293208	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1296018	1.00[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13208709	0.98[ASN][1000 genomes]
rs1952979	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2273667	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2297331	0.82[AMR][1000 genomes]
rs2297333	0.86[CEU][hapmap];0.81[JPT][hapmap]
rs2894572	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34264814	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4143678	0.84[CHB][hapmap];0.80[JPT][hapmap];0.83[AMR][1000 genomes]
rs4711781	0.86[CEU][hapmap];0.85[JPT][hapmap]
rs475426	1.00[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs525043	1.00[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs526851	0.80[ASN][1000 genomes]
rs532492	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs545455	1.00[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs548342	0.93[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs557470	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs559035	1.00[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs564988	0.90[CHB][hapmap];0.90[JPT][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs67182313	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6918742	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs6923521	1.00[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6942323	0.87[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap];0.81[AMR][1000 genomes]
rs864127	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9369488	0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9395016	0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs9395017	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9462985	0.86[CEU][hapmap];0.85[JPT][hapmap];0.81[AMR][1000 genomes]
rs9462989	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9472273	0.87[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019145	chr6:44313576-44421440	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44356400-44393800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:44357600-44388200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:44358000-44384800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr6:44358000-44385600	Strong transcription	HUES6 Cell Line	embryonic stem cell
5	chr6:44358000-44385600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
6	chr6:44358000-44385800	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr6:44358000-44386000	Strong transcription	HUES64 Cell Line	embryonic stem cell
8	chr6:44358200-44385600	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr6:44358400-44385200	Strong transcription	Dnd41	blood
10	chr6:44358400-44386000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr6:44358400-44403800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
12	chr6:44358800-44385600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr6:44359400-44386000	Strong transcription	Rectal Mucosa Donor 29	rectum
14	chr6:44368000-44385000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr6:44368400-44386000	Strong transcription	Cortex derived primary cultured neurospheres	brain
16	chr6:44369400-44385600	Strong transcription	Liver	Liver
17	chr6:44371400-44385600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr6:44371400-44385600	Strong transcription	Fetal Muscle Trunk	muscle
19	chr6:44371400-44385600	Strong transcription	Fetal Muscle Leg	muscle
20	chr6:44371600-44385600	Strong transcription	Primary neutrophils fromperipheralblood	blood
21	chr6:44371600-44385600	Strong transcription	Fetal Lung	lung
22	chr6:44371600-44385800	Strong transcription	Fetal Intestine Large	intestine
23	chr6:44371600-44386000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr6:44371800-44385600	Strong transcription	Fetal Brain Female	brain
25	chr6:44373200-44385600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr6:44374600-44388400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
27	chr6:44376800-44384200	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr6:44376800-44398200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr6:44376800-44424400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr6:44377000-44384800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr6:44377600-44384200	Weak transcription	Colonic Mucosa	Colon
32	chr6:44378000-44384200	Weak transcription	HMEC	breast
33	chr6:44378200-44385600	Strong transcription	Brain Germinal Matrix	brain
34	chr6:44378200-44387800	Weak transcription	Fetal Heart	heart
35	chr6:44378400-44387200	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr6:44378600-44384800	Strong transcription	GM12878-XiMat	blood
37	chr6:44379000-44386000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr6:44379400-44385600	Strong transcription	Placenta	Placenta
39	chr6:44379600-44385600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr6:44379600-44385600	Strong transcription	Adipose Nuclei	Adipose
41	chr6:44379800-44385600	Strong transcription	Fetal Stomach	stomach
42	chr6:44380600-44385600	Strong transcription	HUES48 Cell Line	embryonic stem cell
43	chr6:44381000-44385600	Strong transcription	Stomach Smooth Muscle	stomach
44	chr6:44381000-44385600	Strong transcription	HSMM	muscle
45	chr6:44381200-44384200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr6:44381200-44384800	Weak transcription	Fetal Brain Male	brain
47	chr6:44381600-44384800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr6:44381800-44384200	Genic enhancers	Fetal Thymus	thymus
49	chr6:44382000-44384200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr6:44382000-44384200	Weak transcription	Brain Anterior Caudate	brain

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