Variant report

Variant	rs10808071
Chromosome Location	chr7:87140808-87140809
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:87139412..87141000-chr7:87148797..87150615,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000085563	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10225473	0.82[ASW][hapmap];0.96[GIH][hapmap]
rs10244266	0.96[GIH][hapmap]
rs10268314	0.96[GIH][hapmap]
rs10274587	0.82[ASW][hapmap];0.96[GIH][hapmap]
rs10276603	0.82[ASW][hapmap];0.96[GIH][hapmap]
rs10280101	0.96[GIH][hapmap]
rs10280623	0.85[CEU][hapmap];0.82[GIH][hapmap];0.89[TSI][hapmap]
rs11760837	0.96[GIH][hapmap]
rs11983225	0.96[GIH][hapmap]
rs12334183	0.85[CEU][hapmap];0.82[GIH][hapmap];0.89[TSI][hapmap]
rs12720067	0.96[GIH][hapmap]
rs2032583	0.96[GIH][hapmap]
rs2235015	0.85[CEU][hapmap];0.82[GIH][hapmap];0.89[TSI][hapmap]
rs2235040	0.82[ASW][hapmap];0.96[GIH][hapmap]
rs4148739	0.96[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025277	chr7:86299224-87206007	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv538999	chr7:86299224-87206007	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv888677	chr7:86802025-87781111	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
4	nsv464622	chr7:86832603-87541248	Weak transcription Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
5	nsv607725	chr7:86832603-87541248	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
6	esv1828294	chr7:86857553-87147397	Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
7	nsv1026153	chr7:86905796-87258822	Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
8	nsv1015862	chr7:87075394-88049798	Bivalent/Poised TSS Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10808071	FZD1	cis	parietal	SCAN
rs10808071	GTPBP10	cis	parietal	SCAN

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:87132600-87151400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr7:87132800-87153400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr7:87133400-87164400	Weak transcription	Duodenum Mucosa	Duodenum
4	chr7:87133600-87149600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr7:87134400-87150200	Strong transcription	Primary T cells from cord blood	blood
6	chr7:87134800-87144800	Strong transcription	Placenta	Placenta
7	chr7:87135400-87145200	Weak transcription	Spleen	Spleen
8	chr7:87135400-87198000	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr7:87137200-87142000	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr7:87137200-87144000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr7:87137200-87147400	Strong transcription	Liver	Liver
12	chr7:87138000-87141400	Strong transcription	HepG2	liver
13	chr7:87138400-87173400	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr7:87138800-87142400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr7:87138800-87144000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr7:87138800-87144600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr7:87138800-87145800	Weak transcription	Fetal Intestine Large	intestine
18	chr7:87138800-87160600	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr7:87138800-87185000	Weak transcription	Primary B cells from cord blood	blood
20	chr7:87139000-87142000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr7:87139200-87141800	Enhancers	Fetal Muscle Leg	muscle
22	chr7:87139400-87142200	Weak transcription	Primary hematopoietic stem cells	blood
23	chr7:87139400-87211000	Weak transcription	Primary B cells from peripheral blood	blood
24	chr7:87139600-87141000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr7:87139600-87197800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr7:87139800-87143400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr7:87139800-87144200	Enhancers	Cortex derived primary cultured neurospheres	brain
28	chr7:87140000-87141200	Enhancers	iPS-18 Cell Line	embryonic stem cell
29	chr7:87140000-87142000	Weak transcription	Brain Germinal Matrix	brain
30	chr7:87140200-87142200	Weak transcription	Primary T cells fromperipheralblood	blood
31	chr7:87140400-87141000	Enhancers	iPS-20b Cell Line	embryonic stem cell
32	chr7:87140400-87141600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr7:87140600-87141600	Enhancers	HUES64 Cell Line	embryonic stem cell
34	chr7:87140600-87142400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr7:87140800-87141200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr7:87140800-87141400	Enhancers	iPS-15b Cell Line	embryonic stem cell
37	chr7:87140800-87142600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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