Variant report

Variant	rs10808525
Chromosome Location	chr8:124113386-124113387
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:124113205..124115254-chr8:124116735..124119002,2	K562	blood:
2	chr8:124113359..124117721-chr8:124119367..124124584,5	K562	blood:
3	chr8:124113238..124115407-chr8:124166495..124168725,2	K562	blood:

Variant related genes	Relation type
ENSG00000156787	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10112138	0.87[EUR][1000 genomes]
rs10505429	0.83[TSI][hapmap]
rs10956115	0.82[ASN][1000 genomes]
rs10956116	0.87[TSI][hapmap]
rs10956118	0.85[CHB][hapmap];0.87[JPT][hapmap];0.83[TSI][hapmap];0.86[YRI][hapmap];0.82[ASN][1000 genomes]
rs12545493	0.82[ASN][1000 genomes]
rs12546649	0.87[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.95[MKK][hapmap];0.97[TSI][hapmap];0.91[YRI][hapmap];0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12547393	0.85[CHB][hapmap];0.87[JPT][hapmap];0.83[TSI][hapmap];0.82[ASN][1000 genomes]
rs12675780	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16898012	0.91[CEU][hapmap];0.94[GIH][hapmap];0.91[TSI][hapmap];0.88[EUR][1000 genomes]
rs1713736	0.82[CEU][hapmap];0.81[GIH][hapmap];0.82[MEX][hapmap]
rs2385165	0.91[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.85[MKK][hapmap];0.88[TSI][hapmap];0.86[YRI][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2385166	0.91[CEU][hapmap];0.87[EUR][1000 genomes]
rs6470144	0.83[GIH][hapmap]
rs7000107	0.91[CEU][hapmap];0.86[GIH][hapmap];0.81[MEX][hapmap];0.88[TSI][hapmap];0.86[EUR][1000 genomes]
rs7002086	0.91[CEU][hapmap];0.94[GIH][hapmap];0.91[TSI][hapmap];0.87[EUR][1000 genomes]
rs7008474	0.82[CEU][hapmap];0.82[TSI][hapmap]
rs7827419	0.85[GIH][hapmap]
rs7828295	0.91[CEU][hapmap];0.92[GIH][hapmap];0.82[MEX][hapmap];0.88[TSI][hapmap];0.86[EUR][1000 genomes]
rs7834180	0.91[CEU][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7844632	0.83[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032827	chr8:123668081-124270400	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv529364	chr8:123763846-124373809	Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
3	nsv429939	chr8:124027819-124180819	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv1028933	chr8:124065484-124181718	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
5	nsv1015490	chr8:124103255-124150990	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1015249	chr8:124103504-124373949	Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
7	nsv539741	chr8:124103504-124373949	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs10808525	NOV	cis	parietal	SCAN
rs10808525	WDR67	cis	parietal	SCAN
rs10808525	C8orf76	cis	parietal	SCAN

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124085800-124118800	Weak transcription	Small Intestine	intestine
2	chr8:124086000-124113400	Weak transcription	Brain Angular Gyrus	brain
3	chr8:124086000-124115600	Weak transcription	Right Ventricle	heart
4	chr8:124086000-124115800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr8:124086000-124116200	Weak transcription	Brain Substantia Nigra	brain
6	chr8:124086000-124116600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr8:124086000-124117200	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr8:124086000-124117200	Weak transcription	HSMMtube	muscle
9	chr8:124086000-124146400	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr8:124086000-124154600	Weak transcription	Aorta	Aorta
11	chr8:124086000-124158400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr8:124086000-124168800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr8:124086000-124169000	Weak transcription	Colon Smooth Muscle	Colon
14	chr8:124086200-124115800	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr8:124086200-124122000	Weak transcription	Spleen	Spleen
16	chr8:124086200-124142200	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr8:124086200-124146400	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr8:124086200-124168800	Weak transcription	Esophagus	oesophagus
19	chr8:124086600-124145200	Weak transcription	Fetal Brain Male	brain
20	chr8:124086600-124168800	Weak transcription	Lung	lung
21	chr8:124086800-124114000	Weak transcription	Psoas Muscle	Psoas
22	chr8:124087200-124143800	Weak transcription	Fetal Kidney	kidney
23	chr8:124088600-124115800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr8:124089400-124116400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr8:124095600-124118000	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr8:124095800-124142800	Weak transcription	Fetal Intestine Small	intestine
27	chr8:124096200-124168800	Weak transcription	Liver	Liver
28	chr8:124096400-124118000	Weak transcription	Brain Anterior Caudate	brain
29	chr8:124096600-124114000	Weak transcription	Fetal Lung	lung
30	chr8:124096600-124115800	Weak transcription	NHLF	lung
31	chr8:124096800-124113400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr8:124097400-124133400	Weak transcription	Left Ventricle	heart
33	chr8:124097400-124166800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr8:124098400-124166600	Weak transcription	Gastric	stomach
35	chr8:124098600-124145200	Weak transcription	HUVEC	blood vessel
36	chr8:124099000-124166800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr8:124099200-124115800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr8:124099200-124119400	Weak transcription	Brain Cingulate Gyrus	brain
39	chr8:124099400-124114000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr8:124099400-124118000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr8:124100000-124149800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr8:124104600-124117800	Strong transcription	HUES64 Cell Line	embryonic stem cell
43	chr8:124106000-124119400	Strong transcription	Monocytes-CD14+_RO01746	blood
44	chr8:124107200-124114800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
45	chr8:124107200-124115000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
46	chr8:124107400-124114600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr8:124107400-124166800	Weak transcription	Pancreas	Pancrea
48	chr8:124107600-124114800	Strong transcription	Primary monocytes fromperipheralblood	blood
49	chr8:124107800-124115400	Strong transcription	HUES6 Cell Line	embryonic stem cell
50	chr8:124107800-124116200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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