Variant report

Variant	rs10808545
Chromosome Location	chr8:126463365-126463366
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:126456190..126462141-chr8:126462382..126466063,6	K562	blood:
2	chr8:126460427..126462141-chr8:126462382..126464156,2	K562	blood:
3	chr8:126463045..126467151-chr8:126469162..126473492,5	MCF-7	breast:
4	chr8:126439618..126446192-chr8:126461915..126466706,17	MCF-7	breast:
5	chr8:126458087..126460139-chr8:126462505..126465905,3	MCF-7	breast:
6	chr8:126447250..126449924-chr8:126458992..126464226,4	MCF-7	breast:
7	chr8:126456190..126460053-chr8:126461977..126465679,3	K562	blood:
8	chr8:126462796..126464663-chr8:126479024..126481042,2	MCF-7	breast:
9	chr8:126462918..126464669-chr8:126522806..126525231,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000253111	Chromatin interaction
ENSG00000266452	Chromatin interaction
ENSG00000173334	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10216709	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17730649	0.92[CEU][hapmap];0.93[CHB][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2954019	0.81[JPT][hapmap]
rs2980854	0.81[JPT][hapmap]
rs2980855	0.81[JPT][hapmap]
rs2980871	0.87[JPT][hapmap]
rs4518686	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4537315	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6984241	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7007811	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:126450600-126463800	Weak transcription	Hela-S3	cervix
2	chr8:126452400-126464400	Weak transcription	Spleen	Spleen
3	chr8:126453000-126464000	Weak transcription	NHEK	skin
4	chr8:126453200-126464000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr8:126453200-126464400	Weak transcription	Lung	lung
6	chr8:126459400-126464000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr8:126459400-126464000	Weak transcription	Psoas Muscle	Psoas
8	chr8:126459600-126464000	Weak transcription	Placenta	Placenta
9	chr8:126459600-126464200	Weak transcription	NH-A	brain
10	chr8:126459600-126464400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr8:126459800-126464000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr8:126459800-126464000	Weak transcription	Osteobl	bone
13	chr8:126459800-126464200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr8:126459800-126464200	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr8:126459800-126464200	Weak transcription	Esophagus	oesophagus
16	chr8:126459800-126464200	Weak transcription	Fetal Muscle Trunk	muscle
17	chr8:126459800-126466400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr8:126460000-126464200	Weak transcription	Fetal Muscle Leg	muscle
19	chr8:126460000-126464200	Weak transcription	Left Ventricle	heart
20	chr8:126460000-126464200	Weak transcription	Right Ventricle	heart
21	chr8:126460400-126464000	Weak transcription	Fetal Heart	heart
22	chr8:126460600-126464200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr8:126460800-126464000	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr8:126461000-126464000	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr8:126461600-126464000	Enhancers	HepG2	liver
26	chr8:126462800-126464000	Weak transcription	Liver	Liver
27	chr8:126463000-126463800	Weak transcription	A549	lung

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