Variant report
| Variant | rs10810027 |
|---|---|
| Chromosome Location | chr9:13771127-13771128 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs1034164 | 0.93[ASN][1000 genomes] |
| rs1034165 | 0.93[ASN][1000 genomes] |
| rs1034166 | 0.93[ASN][1000 genomes] |
| rs10810025 | 0.84[ASN][1000 genomes] |
| rs10810029 | 0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs10810030 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs10810032 | 0.89[EUR][1000 genomes] |
| rs10810033 | 0.89[EUR][1000 genomes] |
| rs10961220 | 0.81[EUR][1000 genomes] |
| rs10961230 | 0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs10961231 | 0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs10961244 | 0.81[ASN][1000 genomes] |
| rs10961246 | 0.96[EUR][1000 genomes] |
| rs10961249 | 0.94[EUR][1000 genomes] |
| rs11788753 | 0.82[EUR][1000 genomes] |
| rs11794616 | 0.82[EUR][1000 genomes] |
| rs11794619 | 0.82[EUR][1000 genomes] |
| rs12686464 | 0.81[EUR][1000 genomes] |
| rs1327518 | 0.90[EUR][1000 genomes] |
| rs1327519 | 0.90[EUR][1000 genomes] |
| rs13286852 | 0.95[EUR][1000 genomes] |
| rs1410028 | 0.92[EUR][1000 genomes] |
| rs1562045 | 0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2209783 | 0.92[EUR][1000 genomes] |
| rs4237131 | 0.98[EUR][1000 genomes] |
| rs4741329 | 0.93[ASN][1000 genomes] |
| rs4741333 | 0.96[EUR][1000 genomes] |
| rs7034360 | 0.95[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs7469919 | 0.90[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv892590 | chr9:13689066-13777299 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv1022001 | chr9:13717736-13983738 | Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv892591 | chr9:13763734-13828594 | Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv1033764 | chr9:13764918-14226168 | Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:13758200-13787200 | Weak transcription | Aorta | Aorta |
