Variant report

Variant	rs10810099
Chromosome Location	chr9:14161927-14161928
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:14160671..14162926-chr9:14313281..14316078,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000147862	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10756531	0.87[CHB][hapmap];0.81[JPT][hapmap]
rs10810098	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033764	chr9:13764918-14226168	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv892593	chr9:13948798-14233159	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1023303	chr9:14025605-14286269	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv540069	chr9:14025605-14286269	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv1029491	chr9:14033607-14942373	Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	nsv429998	chr9:14043516-14214688	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
7	nsv892595	chr9:14129951-14168029	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv892596	chr9:14145487-14208724	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:14116600-14179200	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr9:14117000-14171200	Weak transcription	Hela-S3	cervix
3	chr9:14123800-14198600	Weak transcription	Gastric	stomach
4	chr9:14131800-14173200	Weak transcription	Pancreas	Pancrea
5	chr9:14134000-14181000	Weak transcription	Ovary	ovary
6	chr9:14156800-14175600	Weak transcription	Liver	Liver
7	chr9:14157400-14164400	Weak transcription	Fetal Brain Male	brain
8	chr9:14157600-14173600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr9:14159200-14162200	Enhancers	Fetal Lung	lung
10	chr9:14159600-14162200	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr9:14159600-14164200	Weak transcription	Brain Anterior Caudate	brain
12	chr9:14159600-14164400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr9:14159800-14164200	Weak transcription	HMEC	breast
14	chr9:14159800-14164800	Weak transcription	Psoas Muscle	Psoas
15	chr9:14159800-14164800	Weak transcription	Right Ventricle	heart
16	chr9:14159800-14165000	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr9:14159800-14167200	Weak transcription	Left Ventricle	heart
18	chr9:14159800-14169200	Weak transcription	Aorta	Aorta
19	chr9:14159800-14176600	Weak transcription	Fetal Muscle Trunk	muscle
20	chr9:14159800-14180200	Weak transcription	Fetal Stomach	stomach
21	chr9:14160000-14164200	Weak transcription	Rectal Smooth Muscle	rectum
22	chr9:14160000-14164200	Weak transcription	NHEK	skin
23	chr9:14160000-14164400	Weak transcription	Brain Substantia Nigra	brain
24	chr9:14160000-14164800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr9:14160000-14168200	Weak transcription	Fetal Muscle Leg	muscle
26	chr9:14160000-14169600	Weak transcription	Right Atrium	heart
27	chr9:14160200-14164200	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr9:14160200-14164400	Weak transcription	Brain Angular Gyrus	brain
29	chr9:14160200-14164800	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr9:14160200-14165200	Weak transcription	Fetal Brain Female	brain
31	chr9:14160400-14164200	Weak transcription	Brain Hippocampus Middle	brain
32	chr9:14160600-14164200	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr9:14160600-14164200	Weak transcription	Fetal Heart	heart
34	chr9:14160600-14164200	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr9:14160600-14164400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr9:14160600-14164400	Weak transcription	Brain Cingulate Gyrus	brain
37	chr9:14160600-14165000	Weak transcription	Brain Germinal Matrix	brain
38	chr9:14160600-14165000	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr9:14160600-14181400	Weak transcription	HSMM	muscle
40	chr9:14160800-14165200	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr9:14161000-14164800	Weak transcription	A549	lung
42	chr9:14161000-14170600	Weak transcription	HUVEC	blood vessel
43	chr9:14161200-14162000	Enhancers	Adipose Nuclei	Adipose
44	chr9:14161600-14162000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr9:14161800-14162000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr9:14161800-14162000	Enhancers	Colon Smooth Muscle	Colon
47	chr9:14161800-14162000	Enhancers	Small Intestine	intestine
48	chr9:14161800-14162400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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