Variant report

Variant	rs10810173
Chromosome Location	chr9:14530882-14530883
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:14528313..14531170-chr9:14563342..14566028,2	K562	blood:
2	chr9:14526618..14530885-chr9:14532603..14534403,3	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10738366	0.85[ASN][1000 genomes]
rs10738367	0.85[ASN][1000 genomes]
rs10756561	0.80[ASN][1000 genomes]
rs10756562	0.83[ASN][1000 genomes]
rs10756566	0.88[ASN][1000 genomes]
rs10756567	0.88[ASN][1000 genomes]
rs10756568	0.88[ASN][1000 genomes]
rs10756569	0.88[ASN][1000 genomes]
rs1106726	0.84[ASN][1000 genomes]
rs1318729	0.89[CHB][hapmap];0.82[CHD][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs13288173	0.82[ASN][1000 genomes]
rs1887577	0.82[ASN][1000 genomes]
rs2382475	0.82[ASN][1000 genomes]
rs303739	0.82[ASN][1000 genomes]
rs4142080	0.85[ASN][1000 genomes]
rs4615688	0.82[ASN][1000 genomes]
rs913417	0.89[ASN][1000 genomes]
rs982496	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029491	chr9:14033607-14942373	Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv915804	chr9:14182608-14903050	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv916811	chr9:14210978-14542068	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv831517	chr9:14512924-14738206	Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv892604	chr9:14519301-14559910	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv613637	chr9:14524438-15011915	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:14528000-14531400	Active TSS	K562	blood
2	chr9:14528000-14531800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr9:14529000-14532200	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr9:14529200-14533000	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr9:14529400-14531600	Active TSS	Cortex derived primary cultured neurospheres	brain
6	chr9:14529400-14531800	Weak transcription	Fetal Heart	heart
7	chr9:14529400-14532200	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr9:14529400-14532600	Weak transcription	Fetal Kidney	kidney
9	chr9:14529400-14534000	Weak transcription	Right Atrium	heart
10	chr9:14529400-14534000	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr9:14529800-14535600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr9:14530200-14531000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr9:14530200-14532000	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr9:14530200-14532600	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr9:14530200-14533600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr9:14530200-14534400	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr9:14530200-14535000	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr9:14530200-14535600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr9:14530400-14531200	Active TSS	Brain Cingulate Gyrus	brain
20	chr9:14530400-14532000	Flanking Active TSS	Brain Germinal Matrix	brain
21	chr9:14530400-14532600	Enhancers	H1 Cell Line	embryonic stem cell
22	chr9:14530400-14532800	Enhancers	H9 Cell Line	embryonic stem cell
23	chr9:14530600-14531000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
24	chr9:14530600-14531000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr9:14530600-14531000	Active TSS	Brain Hippocampus Middle	brain
26	chr9:14530600-14531200	Flanking Active TSS	Brain Anterior Caudate	brain
27	chr9:14530600-14532000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr9:14530600-14532000	Active TSS	Brain Inferior Temporal Lobe	brain
29	chr9:14530600-14532200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
30	chr9:14530600-14532800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr9:14530600-14532800	Enhancers	Fetal Brain Male	brain
32	chr9:14530800-14531000	Active TSS	Brain Substantia Nigra	brain
33	chr9:14530800-14531400	Active TSS	Fetal Brain Female	brain
34	chr9:14530800-14531800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr9:14530800-14532200	Weak transcription	HSMMtube	muscle

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