Variant report

Variant	rs10810587
Chromosome Location	chr9:16679305-16679306
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10962540	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10962543	0.82[CHD][hapmap];0.91[TSI][hapmap]
rs10962545	0.82[EUR][1000 genomes]
rs12375507	1.00[CHB][hapmap];0.95[CHD][hapmap];0.91[TSI][hapmap];0.80[EUR][1000 genomes]
rs72704100	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530933	chr9:16251206-16830845	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv530934	chr9:16281246-16779432	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1032856	chr9:16465330-16773471	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv540073	chr9:16465330-16773471	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1024799	chr9:16631890-17431827	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
6	esv2758627	chr9:16641966-16809203	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	esv2759673	chr9:16641966-16809203	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv892648	chr9:16661092-16680901	Enhancers Flanking Active TSS Genic enhancers Weak transcription Strong transcription	lncRNA	n/a	inside rSNPs	diseases
9	nsv892649	chr9:16677221-16761597	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16657600-16681400	Weak transcription	Psoas Muscle	Psoas
2	chr9:16665000-16704400	Weak transcription	Aorta	Aorta
3	chr9:16667200-16681000	Weak transcription	Fetal Stomach	stomach
4	chr9:16668800-16679600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr9:16669000-16681400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr9:16671200-16679600	Weak transcription	HUVEC	blood vessel
7	chr9:16671200-16679800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr9:16671200-16681200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr9:16671600-16679600	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr9:16672000-16679400	Weak transcription	HSMM	muscle
11	chr9:16672000-16679600	Weak transcription	HSMMtube	muscle
12	chr9:16672000-16680800	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr9:16672000-16681400	Weak transcription	Stomach Smooth Muscle	stomach
14	chr9:16672400-16679400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr9:16672800-16679400	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr9:16673600-16679600	Weak transcription	NH-A	brain
17	chr9:16674200-16681800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr9:16675200-16682400	Weak transcription	A549	lung
19	chr9:16675600-16679400	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr9:16675600-16679600	Weak transcription	Osteobl	bone
21	chr9:16678400-16679600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr9:16678600-16679600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr9:16678800-16679800	Enhancers	NHLF	lung
24	chr9:16678800-16680000	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr9:16678800-16680200	Enhancers	Colon Smooth Muscle	Colon
26	chr9:16679000-16679400	Enhancers	H9 Cell Line	embryonic stem cell
27	chr9:16679000-16679600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
28	chr9:16679000-16679800	Enhancers	H1 Cell Line	embryonic stem cell
29	chr9:16679000-16679800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
30	chr9:16679000-16679800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr9:16679000-16680000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr9:16679000-16680000	Enhancers	Fetal Muscle Leg	muscle
33	chr9:16679000-16680000	Enhancers	Fetal Thymus	thymus
34	chr9:16679000-16680000	Enhancers	Ovary	ovary
35	chr9:16679000-16680000	Flanking Active TSS	NHDF-Ad	bronchial
36	chr9:16679200-16679600	Weak transcription	Rectal Smooth Muscle	rectum
37	chr9:16679200-16680000	Enhancers	Primary hematopoietic stem cells	blood
38	chr9:16679200-16681200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links