Variant report

Variant	rs10810969
Chromosome Location	chr9:18444487-18444488
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10217753	0.92[CEU][hapmap]
rs10756963	0.82[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs10756964	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10810970	0.82[AFR][1000 genomes]
rs10810971	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10963613	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs11793923	0.87[CHB][hapmap]
rs1281350	0.96[CEU][hapmap];0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1329721	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1340039	0.91[ASN][1000 genomes]
rs1340040	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1340042	0.88[ASN][1000 genomes]
rs1340043	0.82[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs1417035	0.88[ASN][1000 genomes]
rs1576383	0.86[ASN][1000 genomes]
rs1832747	0.88[CEU][hapmap];0.80[EUR][1000 genomes]
rs1888067	0.91[CEU][hapmap];0.88[EUR][1000 genomes]
rs2153414	0.84[ASN][1000 genomes]
rs2153415	0.82[CHB][hapmap]
rs4961649	0.89[EUR][1000 genomes]
rs4961650	0.88[CEU][hapmap]
rs4961652	0.87[CHB][hapmap]
rs4961653	0.92[CEU][hapmap]
rs4961654	0.83[CEU][hapmap]
rs6475216	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6475218	0.88[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs7019399	0.82[CHB][hapmap]
rs7032393	0.87[ASN][1000 genomes]
rs7046502	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831522	chr9:18231982-18459492	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv491807	chr9:18243672-19009770	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv525659	chr9:18288212-19009041	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv1019127	chr9:18288271-18996288	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv892688	chr9:18385143-18551247	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv1029449	chr9:18414752-18829127	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
7	nsv540077	chr9:18414752-18829127	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
8	nsv1030931	chr9:18414752-18903530	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
9	nsv982618	chr9:18443533-18446730	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18439000-18446800	Weak transcription	NHLF	lung
2	chr9:18439200-18446600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr9:18439200-18447200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr9:18439200-18447200	Weak transcription	Fetal Lung	lung
5	chr9:18439200-18447200	Weak transcription	Left Ventricle	heart
6	chr9:18439200-18447200	Weak transcription	Lung	lung
7	chr9:18439200-18447400	Weak transcription	Right Atrium	heart
8	chr9:18439200-18447600	Weak transcription	Brain Cingulate Gyrus	brain
9	chr9:18439400-18446600	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr9:18439400-18446800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr9:18442200-18446600	Weak transcription	Stomach Smooth Muscle	stomach
12	chr9:18442600-18447200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr9:18443000-18447600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr9:18443200-18444800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr9:18443200-18446000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr9:18443200-18446400	Weak transcription	Liver	Liver
17	chr9:18443200-18446600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr9:18443200-18446800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr9:18443200-18447000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr9:18443200-18447200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr9:18443200-18447200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr9:18443200-18447200	Weak transcription	Aorta	Aorta
23	chr9:18443200-18447200	Weak transcription	Brain Hippocampus Middle	brain
24	chr9:18443200-18447200	Weak transcription	NH-A	brain
25	chr9:18443200-18457400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr9:18443400-18446600	Weak transcription	Colon Smooth Muscle	Colon
27	chr9:18443400-18446800	Weak transcription	NHEK	skin
28	chr9:18443400-18447200	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr9:18443400-18447200	Weak transcription	HMEC	breast
30	chr9:18443400-18447200	Weak transcription	NHDF-Ad	bronchial
31	chr9:18443400-18447400	Weak transcription	Osteobl	bone
32	chr9:18443600-18446600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr9:18443600-18447000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr9:18444400-18445200	Enhancers	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links