Variant report

Variant	rs10811113
Chromosome Location	chr9:19093831-19093832
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10465047	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10511670	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10511671	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10811112	0.97[ASN][1000 genomes]
rs10963929	0.81[ASN][1000 genomes]
rs10963930	0.83[ASN][1000 genomes]
rs10963943	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10963944	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10963950	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10963953	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10963955	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10963958	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10963962	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10963964	0.87[ASN][1000 genomes]
rs10963966	0.85[ASN][1000 genomes]
rs11788135	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13291632	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13302453	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16937320	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2291502	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34490350	0.85[ASN][1000 genomes]
rs35448309	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35553284	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35874966	0.85[ASN][1000 genomes]
rs36087651	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3780221	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7026759	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7031392	0.87[ASN][1000 genomes]
rs7040525	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs71508774	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs71508775	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs71508776	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73645573	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7852850	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7864553	0.97[ASN][1000 genomes]
rs7865126	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017820	chr9:18882219-19587377	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
2	nsv540078	chr9:18882219-19587377	Genic enhancers Transcr. at gene 5' and 3' Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
3	nsv892700	chr9:18979441-19156784	Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv1028623	chr9:19034742-19394712	Strong transcription Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
5	nsv540079	chr9:19034742-19394712	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
6	nsv430003	chr9:19074740-19247826	Strong transcription Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
7	esv2764156	chr9:19076894-19097008	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv870340	chr9:19077714-19143230	Genic enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:19051600-19101400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr9:19054400-19097800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
3	chr9:19054800-19098200	Strong transcription	HUES48 Cell Line	embryonic stem cell
4	chr9:19054800-19100800	Strong transcription	HUES64 Cell Line	embryonic stem cell
5	chr9:19055800-19096800	Strong transcription	HUES6 Cell Line	embryonic stem cell
6	chr9:19055800-19098200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
7	chr9:19056000-19096400	Strong transcription	Primary T helper cells fromperipheralblood	blood
8	chr9:19056000-19101200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr9:19056600-19094800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr9:19056600-19095200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr9:19056600-19095400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
12	chr9:19056600-19096000	Strong transcription	Primary T helper cells PMA-I stimulated	--
13	chr9:19056800-19096600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr9:19062000-19102200	Weak transcription	Stomach Mucosa	stomach
15	chr9:19066400-19096600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr9:19066800-19100400	Weak transcription	Fetal Heart	heart
17	chr9:19066800-19100800	Weak transcription	Small Intestine	intestine
18	chr9:19068800-19096800	Strong transcription	Fetal Thymus	thymus
19	chr9:19071200-19101200	Weak transcription	Psoas Muscle	Psoas
20	chr9:19073600-19098400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr9:19074400-19094200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr9:19074400-19094600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr9:19077400-19102200	Weak transcription	Gastric	stomach
24	chr9:19079200-19099600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr9:19079400-19096400	Strong transcription	Dnd41	blood
26	chr9:19079600-19101200	Weak transcription	Ovary	ovary
27	chr9:19081400-19094800	Strong transcription	Fetal Muscle Trunk	muscle
28	chr9:19081400-19097200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr9:19083800-19094800	Strong transcription	Placenta	Placenta
30	chr9:19083800-19096200	Strong transcription	Primary B cells from peripheral blood	blood
31	chr9:19084000-19096400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr9:19084200-19094800	Strong transcription	Rectal Mucosa Donor 29	rectum
33	chr9:19084800-19094200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr9:19084800-19094800	Strong transcription	Brain Germinal Matrix	brain
35	chr9:19084800-19094800	Strong transcription	Duodenum Smooth Muscle	Duodenum
36	chr9:19085000-19096600	Strong transcription	Skeletal Muscle Female	skeletal muscle
37	chr9:19085000-19096800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr9:19085400-19101200	Weak transcription	Colonic Mucosa	Colon
39	chr9:19085600-19094600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr9:19086000-19096400	Strong transcription	Liver	Liver
41	chr9:19086000-19096600	Strong transcription	H1 Cell Line	embryonic stem cell
42	chr9:19086200-19094800	Strong transcription	Thymus	Thymus
43	chr9:19086200-19095400	Strong transcription	Duodenum Mucosa	Duodenum
44	chr9:19086400-19096800	Strong transcription	Fetal Intestine Large	intestine
45	chr9:19086600-19094600	Strong transcription	Fetal Lung	lung
46	chr9:19086600-19094600	Strong transcription	GM12878-XiMat	blood
47	chr9:19086600-19095000	Strong transcription	Primary B cells from cord blood	blood
48	chr9:19086600-19102200	Weak transcription	Aorta	Aorta
49	chr9:19086800-19096000	Strong transcription	Primary T cells fromperipheralblood	blood
50	chr9:19087000-19094400	Strong transcription	Rectal Mucosa Donor 31	rectum

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