Variant report

Variant	rs10811633
Chromosome Location	chr9:2198340-2198341
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10965177	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2104341	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016148	chr9:1457605-2361750	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv539916	chr9:1457605-2361750	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv1021712	chr9:1647840-2216839	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv539921	chr9:1647840-2216839	Bivalent Enhancer Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	nsv1020530	chr9:1870197-2658587	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
6	nsv530929	chr9:1998911-2925112	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
7	nsv1022063	chr9:2094860-2215240	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
8	nsv539926	chr9:2094860-2215240	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
9	nsv892056	chr9:2124140-2227217	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
10	nsv892057	chr9:2144687-2241994	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:2173200-2201800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:2179400-2202800	Weak transcription	Psoas Muscle	Psoas
3	chr9:2180800-2198800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr9:2181600-2198800	Strong transcription	Primary T helper cells fromperipheralblood	blood
5	chr9:2181600-2199200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr9:2181600-2199400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr9:2182400-2198400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr9:2182400-2199200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr9:2188000-2201600	Weak transcription	Small Intestine	intestine
10	chr9:2188400-2202400	Strong transcription	Primary T cells from cord blood	blood
11	chr9:2188600-2198400	Strong transcription	Primary B cells from cord blood	blood
12	chr9:2189000-2199000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr9:2191600-2213800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr9:2191600-2221200	Weak transcription	Gastric	stomach
15	chr9:2192000-2199200	Weak transcription	HUVEC	blood vessel
16	chr9:2192200-2199800	Weak transcription	Colonic Mucosa	Colon
17	chr9:2192200-2200000	Weak transcription	Fetal Intestine Small	intestine
18	chr9:2192200-2200000	Weak transcription	Pancreas	Pancrea
19	chr9:2192200-2200200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr9:2192800-2202400	Weak transcription	Colon Smooth Muscle	Colon
21	chr9:2193000-2198400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr9:2193000-2199200	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr9:2193200-2200400	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr9:2193200-2200400	Weak transcription	Fetal Lung	lung
25	chr9:2193200-2208600	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr9:2193600-2198800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr9:2194000-2199000	Weak transcription	Fetal Brain Female	brain
28	chr9:2194000-2199200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr9:2194000-2202200	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr9:2194200-2203000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr9:2194200-2203200	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr9:2194800-2199000	Weak transcription	Fetal Thymus	thymus
33	chr9:2195200-2199200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr9:2195200-2199400	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr9:2195200-2199400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr9:2195800-2198400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr9:2195800-2198600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
38	chr9:2195800-2201800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr9:2196000-2198800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr9:2196000-2199800	Weak transcription	Placenta	Placenta
41	chr9:2196000-2200000	Weak transcription	Lung	lung
42	chr9:2196000-2200200	Weak transcription	Spleen	Spleen
43	chr9:2196000-2200400	Weak transcription	Ovary	ovary
44	chr9:2196000-2200400	Weak transcription	Right Ventricle	heart
45	chr9:2196000-2203200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr9:2196200-2199200	Weak transcription	Adipose Nuclei	Adipose
47	chr9:2196200-2200400	Weak transcription	Esophagus	oesophagus
48	chr9:2196200-2200600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr9:2196200-2200600	Weak transcription	Dnd41	blood
50	chr9:2196400-2198400	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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