Variant report

Variant	rs10812784
Chromosome Location	chr9:2843647-2843648
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:2806397..2808732-chr9:2841740..2844486,2	MCF-7	breast:
2	chr9:2841657..2846061-chr9:3525153..3529600,6	K562	blood:
3	chr9:2842064..2844768-chr9:3524803..3527756,2	K562	blood:
4	chr9:2841153..2844089-chr9:2845001..2847506,3	MCF-7	breast:
5	chr9:2843355..2844167-chr9:35072222..35073033,2	NB4	blood:

Variant related genes	Relation type
ENSG00000080298	Chromatin interaction
ENSG00000232104	Chromatin interaction
ENSG00000080608	Chromatin interaction
ENSG00000165280	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs10733432	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530929	chr9:1998911-2925112	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv1017581	chr9:2494815-3172020	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv539934	chr9:2494815-3172020	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv892079	chr9:2681430-2931341	Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	nsv892081	chr9:2691186-2851026	Active TSS Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
6	nsv1024262	chr9:2703159-3067931	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
7	nsv1028011	chr9:2759097-2904277	Enhancers Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
8	nsv1022873	chr9:2768825-2863264	Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
9	nsv892083	chr9:2809548-2900651	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:2841800-2844800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr9:2842000-2844800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr9:2842400-2844800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr9:2842600-2844600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
5	chr9:2842600-2845400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr9:2842800-2844600	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr9:2842800-2844600	Active TSS	Rectal Mucosa Donor 29	rectum
8	chr9:2842800-2844800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr9:2842800-2844800	Active TSS	Aorta	Aorta
10	chr9:2842800-2845000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr9:2842800-2845200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr9:2842800-2845200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr9:2842800-2845400	Active TSS	ES-I3 Cell Line	embryonic stem cell
14	chr9:2842800-2845400	Active TSS	H1 Cell Line	embryonic stem cell
15	chr9:2842800-2845400	Active TSS	K562	blood
16	chr9:2842800-2845600	Active TSS	Colonic Mucosa	Colon
17	chr9:2843000-2844000	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
18	chr9:2843000-2844600	Active TSS	iPS-18 Cell Line	embryonic stem cell
19	chr9:2843000-2844600	Active TSS	Fetal Adrenal Gland	Adrenal Gland
20	chr9:2843000-2844800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
21	chr9:2843000-2844800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr9:2843000-2844800	Active TSS	HUES64 Cell Line	embryonic stem cell
23	chr9:2843000-2844800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr9:2843000-2844800	Active TSS	Ovary	ovary
25	chr9:2843000-2844800	Active TSS	Right Ventricle	heart
26	chr9:2843000-2844800	Active TSS	HSMM	muscle
27	chr9:2843000-2844800	Active TSS	NH-A	brain
28	chr9:2843000-2845000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr9:2843000-2845000	Active TSS	Breast Myoepithelial Primary Cells	Breast
30	chr9:2843000-2845000	Active TSS	NHDF-Ad	bronchial
31	chr9:2843000-2845000	Active TSS	NHLF	lung
32	chr9:2843000-2845200	Active TSS	H9 Cell Line	embryonic stem cell
33	chr9:2843000-2845200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr9:2843000-2845200	Active TSS	Muscle Satellite Cultured Cells	--
35	chr9:2843000-2845200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr9:2843000-2845200	Active TSS	A549	lung
37	chr9:2843000-2845200	Active TSS	GM12878-XiMat	blood
38	chr9:2843000-2845400	Active TSS	HUES48 Cell Line	embryonic stem cell
39	chr9:2843000-2845400	Active TSS	HUES6 Cell Line	embryonic stem cell
40	chr9:2843000-2845400	Active TSS	Fetal Muscle Trunk	muscle
41	chr9:2843000-2845600	Active TSS	iPS-15b Cell Line	embryonic stem cell
42	chr9:2843000-2845600	Active TSS	Right Atrium	heart
43	chr9:2843200-2844600	Active TSS	Primary T helper cells PMA-I stimulated	--
44	chr9:2843200-2844600	Active TSS	Pancreatic Islets	Pancreatic Islet
45	chr9:2843200-2844600	Active TSS	HUVEC	blood vessel
46	chr9:2843200-2844800	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr9:2843200-2844800	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr9:2843200-2844800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr9:2843200-2844800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr9:2843200-2844800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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