Variant report

Variant	rs10815485
Chromosome Location	chr9:6939457-6939458
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10125216	0.91[ASN][1000 genomes]
rs10758810	0.84[EUR][1000 genomes]
rs10758812	0.82[EUR][1000 genomes]
rs10815484	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10815486	0.94[EUR][1000 genomes]
rs10815487	0.92[EUR][1000 genomes]
rs10815488	0.92[EUR][1000 genomes]
rs10815489	0.85[EUR][1000 genomes]
rs10975898	0.90[EUR][1000 genomes]
rs10975900	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10975902	0.98[ASN][1000 genomes]
rs10975903	0.98[ASN][1000 genomes]
rs10975904	0.98[ASN][1000 genomes]
rs10975905	0.98[ASN][1000 genomes]
rs10975906	0.98[ASN][1000 genomes]
rs10975908	0.98[ASN][1000 genomes]
rs10975912	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10975913	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10975917	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10975921	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10975922	0.93[ASN][1000 genomes]
rs10975924	0.82[EUR][1000 genomes]
rs10975937	0.88[EUR][1000 genomes]
rs12349290	0.96[ASN][1000 genomes]
rs12352785	0.91[EUR][1000 genomes]
rs12686310	0.94[ASN][1000 genomes]
rs1538845	0.82[EUR][1000 genomes]
rs2821441	0.81[EUR][1000 genomes]
rs4740864	0.94[EUR][1000 genomes]
rs4742272	0.88[EUR][1000 genomes]
rs4742273	0.92[EUR][1000 genomes]
rs56808908	0.93[ASN][1000 genomes]
rs57054567	0.93[ASN][1000 genomes]
rs59139150	0.93[ASN][1000 genomes]
rs61700387	0.93[ASN][1000 genomes]
rs6477129	0.94[EUR][1000 genomes]
rs6477130	0.94[EUR][1000 genomes]
rs6477132	0.92[EUR][1000 genomes]
rs7022642	0.82[EUR][1000 genomes]
rs7022938	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7026745	0.92[EUR][1000 genomes]
rs7031585	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7038154	0.96[EUR][1000 genomes]
rs7044390	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7851578	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7852078	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7852362	0.90[EUR][1000 genomes]
rs7862859	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7863791	0.91[EUR][1000 genomes]
rs7868655	0.91[EUR][1000 genomes]
rs7868759	0.92[EUR][1000 genomes]
rs7876040	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs818902	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870402	chr9:6565246-7016784	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
2	nsv1033539	chr9:6566610-7022554	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
3	nsv466111	chr9:6567841-7017391	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
4	nsv613208	chr9:6567841-7017391	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
5	nsv1024831	chr9:6573752-7018641	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	70 gene(s)	inside rSNPs	diseases
6	nsv892166	chr9:6602821-7222495	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
7	nsv892181	chr9:6680477-7070962	Enhancers Strong transcription Active TSS Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	70 gene(s)	inside rSNPs	diseases
8	nsv613252	chr9:6715730-7022554	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
9	nsv1023906	chr9:6731786-7372132	Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
10	nsv1023461	chr9:6774993-7022554	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv831500	chr9:6847952-6992535	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv831501	chr9:6868099-7058526	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv892184	chr9:6906384-6985602	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	nsv892185	chr9:6929053-7070962	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
15	nsv1021234	chr9:6933222-7015397	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:6890000-6987200	Weak transcription	Aorta	Aorta
2	chr9:6893800-6981600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr9:6896200-6959000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr9:6900600-6943000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr9:6901600-6944200	Weak transcription	Duodenum Mucosa	Duodenum
6	chr9:6908800-6942600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr9:6912400-6978400	Weak transcription	Esophagus	oesophagus
8	chr9:6921600-6957600	Weak transcription	Thymus	Thymus
9	chr9:6921800-6960400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr9:6922000-6941600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr9:6922200-6959000	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr9:6922600-6944800	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr9:6922600-6981000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr9:6924600-6957400	Weak transcription	Fetal Thymus	thymus
15	chr9:6928600-6941400	Weak transcription	Primary T cells from cord blood	blood
16	chr9:6929800-6944800	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr9:6930000-6939600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr9:6931200-6942800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr9:6931400-6958600	Weak transcription	Primary T helper cells fromperipheralblood	blood
20	chr9:6931400-6960000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr9:6932400-6943600	Weak transcription	Primary B cells from cord blood	blood
22	chr9:6932400-6944200	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr9:6932400-6945400	Weak transcription	Fetal Intestine Large	intestine
24	chr9:6932600-6944200	Weak transcription	Small Intestine	intestine
25	chr9:6932600-6949600	Weak transcription	Primary T cells fromperipheralblood	blood
26	chr9:6932800-6941600	Weak transcription	Pancreas	Pancrea
27	chr9:6932800-6943400	Weak transcription	Left Ventricle	heart
28	chr9:6932800-6944200	Weak transcription	Psoas Muscle	Psoas
29	chr9:6932800-6944800	Weak transcription	Gastric	stomach
30	chr9:6932800-6955000	Weak transcription	Right Atrium	heart
31	chr9:6932800-6985000	Weak transcription	Spleen	Spleen
32	chr9:6933400-6944000	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr9:6933600-6944600	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr9:6933800-6943200	Weak transcription	HepG2	liver
35	chr9:6936800-6965200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
36	chr9:6937000-6943600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr9:6937400-6940400	Enhancers	NHDF-Ad	bronchial
38	chr9:6937600-6939600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr9:6937600-6939800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr9:6937800-6939800	Enhancers	Muscle Satellite Cultured Cells	--
41	chr9:6938000-6939600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr9:6938000-6939600	Enhancers	NH-A	brain
43	chr9:6938000-6939800	Enhancers	NHLF	lung
44	chr9:6938600-6939600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr9:6938600-6939800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr9:6938800-6941600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr9:6938800-6960400	Weak transcription	Adipose Nuclei	Adipose
48	chr9:6939000-6943000	Weak transcription	HUVEC	blood vessel
49	chr9:6939200-6939600	Enhancers	Fetal Lung	lung
50	chr9:6939200-6943600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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