Variant report

Variant	rs10815529
Chromosome Location	chr9:7147976-7147977
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:7134161..7136244-chr9:7147456..7149239,2	K562	blood:
2	chr9:7144039..7145587-chr9:7147490..7149036,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10739118	0.87[ASN][1000 genomes]
rs10739119	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2146789	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4378016	0.80[EUR][1000 genomes]
rs6477170	0.81[EUR][1000 genomes]
rs7871703	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7871719	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892166	chr9:6602821-7222495	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv1023906	chr9:6731786-7372132	Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv613259	chr9:7032776-7541338	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv1015874	chr9:7048807-7434890	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv539971	chr9:7048807-7434890	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
6	nsv892189	chr9:7091968-7150997	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv892190	chr9:7094860-7186074	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:7103000-7148600	Strong transcription	Primary B cells from peripheral blood	blood
2	chr9:7104200-7148200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr9:7104600-7148000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr9:7104800-7153200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr9:7121600-7148000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr9:7121800-7148800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr9:7122000-7149000	Strong transcription	Primary B cells from cord blood	blood
8	chr9:7128000-7153200	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr9:7129600-7149400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr9:7129800-7148400	Weak transcription	Esophagus	oesophagus
11	chr9:7130200-7148000	Weak transcription	Dnd41	blood
12	chr9:7130200-7154800	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr9:7130600-7152400	Weak transcription	Small Intestine	intestine
14	chr9:7133000-7148600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr9:7134200-7148200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr9:7134200-7148600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr9:7135200-7164800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr9:7136000-7148000	Weak transcription	GM12878-XiMat	blood
19	chr9:7136000-7148400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr9:7136200-7148400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr9:7136600-7148000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr9:7136600-7148600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr9:7136600-7149000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr9:7136600-7153200	Weak transcription	HepG2	liver
25	chr9:7137600-7148400	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chr9:7137800-7148000	Weak transcription	Liver	Liver
27	chr9:7137800-7149600	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr9:7138000-7148200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr9:7139400-7149000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr9:7140200-7148800	Strong transcription	Primary T cells from cord blood	blood
31	chr9:7143800-7148200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr9:7144200-7148400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr9:7144200-7148800	Strong transcription	Monocytes-CD14+_RO01746	blood
34	chr9:7144600-7148400	Enhancers	Brain Anterior Caudate	brain
35	chr9:7144800-7150000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr9:7145200-7148000	Enhancers	Colon Smooth Muscle	Colon
37	chr9:7145200-7148000	Weak transcription	Fetal Thymus	thymus
38	chr9:7145400-7148600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
39	chr9:7145600-7148000	Weak transcription	Right Atrium	heart
40	chr9:7145800-7148200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr9:7145800-7148400	Weak transcription	Primary T helper cells fromperipheralblood	blood
42	chr9:7146400-7148600	Enhancers	HMEC	breast
43	chr9:7146400-7148800	Enhancers	Breast Myoepithelial Primary Cells	Breast
44	chr9:7146600-7148000	Enhancers	Brain Cingulate Gyrus	brain
45	chr9:7146600-7148400	Enhancers	Brain Inferior Temporal Lobe	brain
46	chr9:7146600-7148600	Strong transcription	Primary hematopoietic stem cells	blood
47	chr9:7146600-7148600	Enhancers	Ovary	ovary
48	chr9:7146600-7149800	Strong transcription	Duodenum Mucosa	Duodenum
49	chr9:7146600-7150200	Enhancers	Brain Hippocampus Middle	brain
50	chr9:7146600-7150400	Enhancers	Psoas Muscle	Psoas

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