Variant report

Variant	rs10815809
Chromosome Location	chr9:8262621-8262622
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1027581	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10815810	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10815812	0.97[ASN][1000 genomes]
rs10815813	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10815814	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10815815	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10976891	1.00[ASN][1000 genomes]
rs10976893	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10976894	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10976896	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10976898	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10976899	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10976900	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10976902	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10976904	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10976905	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10976907	0.90[ASN][1000 genomes]
rs12005381	0.94[ASN][1000 genomes]
rs12115294	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1500302	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2133789	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3913378	0.86[ASN][1000 genomes]
rs55814769	0.97[ASN][1000 genomes]
rs55842332	0.97[ASN][1000 genomes]
rs56138940	0.93[ASN][1000 genomes]
rs56184014	0.97[ASN][1000 genomes]
rs56245835	0.97[ASN][1000 genomes]
rs56246859	0.97[ASN][1000 genomes]
rs58980414	0.91[ASN][1000 genomes]
rs59157573	0.97[ASN][1000 genomes]
rs73640797	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8414	chr9:7827373-8511613	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv613284	chr9:8165192-8279622	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	n/a	n/a	inside rSNPs	diseases
3	nsv1016723	chr9:8223541-8303017	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
4	esv3693381	chr9:8231940-8268051	Weak transcription Enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
5	nsv1019092	chr9:8241736-8262808	Weak transcription Enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
6	nsv613285	chr9:8244354-8270248	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
7	nsv466123	chr9:8247628-8270248	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
8	nsv613286	chr9:8247628-8270248	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
9	nsv1031472	chr9:8250901-8712547	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
10	nsv892223	chr9:8258921-8318948	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS	miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8251800-8263000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:8255000-8267800	Weak transcription	Pancreas	Pancrea
3	chr9:8259200-8263000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr9:8260600-8266000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr9:8261400-8263400	Enhancers	Fetal Thymus	thymus
6	chr9:8261400-8263400	Enhancers	Thymus	Thymus
7	chr9:8261600-8263200	Enhancers	Ovary	ovary
8	chr9:8261600-8263600	Enhancers	Colon Smooth Muscle	Colon
9	chr9:8261800-8262800	Weak transcription	Fetal Intestine Small	intestine
10	chr9:8261800-8262800	Weak transcription	Fetal Stomach	stomach
11	chr9:8261800-8263000	Weak transcription	Dnd41	blood
12	chr9:8262000-8263000	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr9:8262000-8263400	Enhancers	Psoas Muscle	Psoas
14	chr9:8262400-8262800	Enhancers	Fetal Lung	lung
15	chr9:8262400-8263200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr9:8262600-8263400	Enhancers	Fetal Muscle Leg	muscle
17	chr9:8262600-8263600	Enhancers	Fetal Heart	heart
18	chr9:8262600-8263800	Enhancers	Stomach Smooth Muscle	stomach
19	chr9:8262600-8265800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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