Variant report

Variant	rs10815846
Chromosome Location	chr9:8387588-8387589
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10116650	1.00[JPT][hapmap]
rs10123746	1.00[JPT][hapmap]
rs1021720	1.00[JPT][hapmap]
rs10511494	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10815845	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10815847	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10815849	0.86[AFR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10815855	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10815856	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10815857	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10977024	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10977035	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10977046	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10977052	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10977057	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10977059	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs10977062	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10977064	0.94[ASN][1000 genomes]
rs10977073	1.00[ASN][1000 genomes]
rs10977074	1.00[ASN][1000 genomes]
rs10977084	0.87[YRI][hapmap]
rs10977089	0.88[YRI][hapmap]
rs10977092	1.00[JPT][hapmap]
rs12376680	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs12377175	0.97[ASN][1000 genomes]
rs12685058	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs12686400	1.00[CHB][hapmap]
rs1500331	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17561379	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1909757	1.00[JPT][hapmap]
rs1909758	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8414	chr9:7827373-8511613	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1031472	chr9:8250901-8712547	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1022796	chr9:8360729-9110046	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv526971	chr9:8382720-8388220	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8339600-8397600	Weak transcription	Fetal Muscle Leg	muscle
2	chr9:8361400-8401600	Weak transcription	Fetal Muscle Trunk	muscle
3	chr9:8364800-8401600	Weak transcription	Brain Germinal Matrix	brain
4	chr9:8365000-8395400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr9:8367200-8394600	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr9:8367200-8399800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr9:8373000-8402200	Weak transcription	Fetal Kidney	kidney
8	chr9:8374000-8394400	Weak transcription	Fetal Heart	heart
9	chr9:8376800-8393200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr9:8376800-8401800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr9:8377800-8406400	Weak transcription	Fetal Brain Female	brain
12	chr9:8383400-8387600	Weak transcription	Pancreas	Pancrea
13	chr9:8383600-8405200	Weak transcription	Aorta	Aorta
14	chr9:8384000-8387800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr9:8384000-8389200	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr9:8384200-8394600	Weak transcription	Left Ventricle	heart
17	chr9:8384800-8389200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr9:8385200-8401400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr9:8385800-8387800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr9:8386200-8387800	Enhancers	Brain Angular Gyrus	brain
21	chr9:8386400-8387800	Enhancers	Brain Cingulate Gyrus	brain
22	chr9:8386600-8388400	Strong transcription	Primary hematopoietic stem cells	blood
23	chr9:8386800-8387600	Enhancers	Brain Hippocampus Middle	brain
24	chr9:8386800-8387800	Enhancers	Ovary	ovary
25	chr9:8386800-8388000	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr9:8386800-8388400	Enhancers	Brain Anterior Caudate	brain
27	chr9:8387000-8394600	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr9:8387200-8392600	Weak transcription	Fetal Lung	lung

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