Variant report

Variant	rs10815918
Chromosome Location	chr9:8572245-8572246
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10114754	0.80[EUR][1000 genomes]
rs10511500	0.84[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs10977208	0.87[EUR][1000 genomes]
rs10977209	0.90[AFR][1000 genomes]
rs10977210	0.81[EUR][1000 genomes]
rs12348902	0.84[EUR][1000 genomes]
rs1337811	0.86[EUR][1000 genomes]
rs4742522	0.83[AFR][1000 genomes]
rs4742524	0.81[EUR][1000 genomes]
rs58948334	0.90[AFR][1000 genomes]
rs7023351	0.81[EUR][1000 genomes]
rs7031249	0.81[EUR][1000 genomes]
rs7048272	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031472	chr9:8250901-8712547	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1022796	chr9:8360729-9110046	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv892228	chr9:8482778-8703733	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv831504	chr9:8496277-8665773	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv1026208	chr9:8534915-8595338	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv892230	chr9:8569186-8643259	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv892231	chr9:8569186-8659757	Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv969781	chr9:8570039-8591459	Weak transcription Enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8557400-8575200	Weak transcription	Fetal Kidney	kidney
2	chr9:8568200-8572400	Enhancers	Brain Substantia Nigra	brain
3	chr9:8570600-8572400	Enhancers	Fetal Heart	heart
4	chr9:8570600-8576000	Enhancers	Fetal Lung	lung
5	chr9:8571200-8575400	Weak transcription	Brain Hippocampus Middle	brain
6	chr9:8571200-8576800	Weak transcription	Brain Angular Gyrus	brain
7	chr9:8571600-8573400	Weak transcription	Brain Cingulate Gyrus	brain
8	chr9:8571600-8573600	Weak transcription	Brain Anterior Caudate	brain
9	chr9:8571800-8572400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr9:8572000-8575800	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr9:8572000-8579600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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