Variant report

Variant	rs10816498
Chromosome Location	chr9:110115409-110115410
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:110045030..110047891-chr9:110112419..110115505,4	MCF-7	breast:
2	chr9:110112610..110115972-chr9:110119503..110124106,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000119318	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10521083	1.00[YRI][hapmap]
rs10739236	1.00[YRI][hapmap]
rs10759228	0.96[ASN][1000 genomes]
rs10816494	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10816495	0.96[ASN][1000 genomes]
rs10816496	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10816497	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10816499	0.99[ASN][1000 genomes]
rs10978800	0.89[ASN][1000 genomes]
rs10978801	0.95[ASN][1000 genomes]
rs10978802	0.95[ASN][1000 genomes]
rs10978803	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10978804	0.93[ASN][1000 genomes]
rs10978805	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10978807	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1805334	1.00[YRI][hapmap]
rs2417784	1.00[YRI][hapmap]
rs2417786	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs36009937	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4278207	1.00[YRI][hapmap]
rs6477570	0.95[ASN][1000 genomes]
rs7035611	1.00[YRI][hapmap]
rs7041497	1.00[YRI][hapmap]
rs7861832	0.91[ASN][1000 genomes]
rs7862000	0.91[ASN][1000 genomes]
rs7862074	0.91[ASN][1000 genomes]
rs7862211	0.91[ASN][1000 genomes]
rs7866008	0.90[ASN][1000 genomes]
rs7874386	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7875541	0.89[ASN][1000 genomes]
rs817836	1.00[YRI][hapmap]
rs817840	1.00[YRI][hapmap]
rs817841	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869351	chr9:109593212-110191170	Active TSS Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv530948	chr9:109760752-110413602	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	nsv1042965	chr9:110100745-110126661	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv893699	chr9:110107862-110188197	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110114400-110119200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr9:110114600-110122200	Weak transcription	Placenta Amnion	Placenta Amnion

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