Variant report

Variant	rs10816572
Chromosome Location	chr9:99558915-99558916
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 97 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs10115814	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.87[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10116146	1.00[CEU][hapmap];0.81[JPT][hapmap]
rs10116462	1.00[CEU][hapmap];0.81[JPT][hapmap]
rs10117162	0.88[JPT][hapmap]
rs10119439	1.00[ASN][1000 genomes]
rs10119466	1.00[ASN][1000 genomes]
rs10120515	1.00[CEU][hapmap];0.81[JPT][hapmap]
rs10122464	1.00[ASN][1000 genomes]
rs10124033	1.00[CEU][hapmap];0.85[JPT][hapmap]
rs10124911	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10816533	1.00[CEU][hapmap];0.85[JPT][hapmap]
rs10816560	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10816602	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10816647	1.00[CEU][hapmap];0.81[JPT][hapmap]
rs10816663	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10978669	0.92[EUR][1000 genomes]
rs10978699	0.92[EUR][1000 genomes]
rs10978727	0.83[EUR][1000 genomes]
rs10978778	0.86[ASN][1000 genomes]
rs10978862	0.98[ASN][1000 genomes]
rs10978891	1.00[CEU][hapmap];0.93[CHB][hapmap];0.95[JPT][hapmap];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10978909	0.83[CHB][hapmap];0.82[JPT][hapmap];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10978916	0.98[ASN][1000 genomes]
rs10978917	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10978953	1.00[CEU][hapmap];0.85[JPT][hapmap]
rs10979019	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10979152	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10979175	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10979212	1.00[CEU][hapmap];0.81[JPT][hapmap]
rs10979266	0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10979268	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10979329	1.00[CEU][hapmap];0.85[JPT][hapmap]
rs10979353	0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11534219	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11536801	0.92[EUR][1000 genomes]
rs12236125	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs12237908	1.00[CEU][hapmap];0.85[JPT][hapmap]
rs12339579	0.99[ASN][1000 genomes]
rs12340602	0.99[ASN][1000 genomes]
rs12347618	1.00[CEU][hapmap];0.81[JPT][hapmap]
rs12349952	1.00[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap]
rs12352138	0.99[ASN][1000 genomes]
rs12352656	1.00[ASN][1000 genomes]
rs1327781	1.00[CEU][hapmap];0.81[JPT][hapmap]
rs16911453	0.92[EUR][1000 genomes]
rs16911458	1.00[CEU][hapmap];0.84[JPT][hapmap];0.92[EUR][1000 genomes]
rs16911569	0.97[ASN][1000 genomes]
rs2281952	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2289649	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2289651	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2486612	1.00[CEU][hapmap];0.84[JPT][hapmap]
rs2809685	1.00[CEU][hapmap];0.81[JPT][hapmap]
rs28489285	0.97[ASN][1000 genomes]
rs28677792	0.95[ASN][1000 genomes]
rs28786462	0.99[ASN][1000 genomes]
rs28844439	0.99[ASN][1000 genomes]
rs35334289	1.00[CEU][hapmap];0.85[JPT][hapmap]
rs3758299	1.00[CEU][hapmap];0.89[JPT][hapmap]
rs3780549	1.00[CEU][hapmap];0.81[JPT][hapmap]
rs3780550	1.00[CEU][hapmap];0.81[JPT][hapmap]
rs3780551	1.00[CEU][hapmap];0.81[JPT][hapmap]
rs3780552	1.00[CEU][hapmap];0.81[JPT][hapmap]
rs3780553	1.00[CEU][hapmap];0.81[JPT][hapmap]
rs41306482	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4344199	1.00[ASN][1000 genomes]
rs4645656	1.00[CEU][hapmap];0.85[JPT][hapmap]
rs57046479	0.99[ASN][1000 genomes]
rs57364635	0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60072763	1.00[ASN][1000 genomes]
rs60386249	0.98[ASN][1000 genomes]
rs6477715	0.97[ASN][1000 genomes]
rs7022992	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7030131	1.00[ASN][1000 genomes]
rs7036728	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7037100	1.00[CEU][hapmap];0.85[JPT][hapmap]
rs7037169	1.00[CEU][hapmap];0.85[JPT][hapmap]
rs73544799	0.92[EUR][1000 genomes]
rs73552429	0.95[ASN][1000 genomes]
rs73654606	0.99[ASN][1000 genomes]
rs73654610	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7846956	0.93[ASN][1000 genomes]
rs7847117	1.00[ASN][1000 genomes]
rs7847558	1.00[ASN][1000 genomes]
rs7848710	0.84[JPT][hapmap]
rs7850707	1.00[CEU][hapmap];0.81[JPT][hapmap]
rs7856667	0.99[ASN][1000 genomes]
rs7859307	1.00[CEU][hapmap];0.85[JPT][hapmap]
rs7859940	1.00[CEU][hapmap];0.85[JPT][hapmap]
rs7860308	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs7870376	1.00[CEU][hapmap];0.81[JPT][hapmap]
rs7870734	0.95[ASN][1000 genomes]
rs7874781	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053215	chr9:99483926-99824810	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv831660	chr9:99485058-99672080	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv520001	chr9:99533434-99795125	Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv6624	chr9:99548787-99593968	ZNF genes & repeats Weak transcription Strong transcription Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv1824059	chr9:99557743-99589296	Strong transcription Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:99552000-99560400	ZNF genes & repeats	Liver	Liver
2	chr9:99552200-99559200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr9:99552200-99559400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr9:99555200-99559200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr9:99555200-99559200	ZNF genes & repeats	Colon Smooth Muscle	Colon
6	chr9:99555200-99559400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr9:99555200-99559400	ZNF genes & repeats	Duodenum Mucosa	Duodenum
8	chr9:99555200-99560400	ZNF genes & repeats	Adipose Nuclei	Adipose
9	chr9:99555400-99559400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
10	chr9:99555600-99559200	ZNF genes & repeats	Fetal Lung	lung
11	chr9:99555600-99559400	ZNF genes & repeats	Primary B cells from cord blood	blood
12	chr9:99555600-99559400	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
13	chr9:99556000-99559400	ZNF genes & repeats	Fetal Brain Female	brain
14	chr9:99556400-99559000	ZNF genes & repeats	Primary B cells from peripheral blood	blood
15	chr9:99556400-99559200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
16	chr9:99556400-99559200	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr9:99556400-99559400	ZNF genes & repeats	HSMM	muscle
18	chr9:99556600-99559000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr9:99556600-99559200	ZNF genes & repeats	Primary T cells from cord blood	blood
20	chr9:99556600-99559200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
21	chr9:99556600-99559200	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
22	chr9:99556600-99559200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr9:99556600-99559200	ZNF genes & repeats	Brain Hippocampus Middle	brain
24	chr9:99556600-99559200	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
25	chr9:99556600-99559400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
26	chr9:99556600-99559400	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
27	chr9:99556600-99559400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
28	chr9:99556800-99559000	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
29	chr9:99556800-99559000	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
30	chr9:99556800-99559000	ZNF genes & repeats	Small Intestine	intestine
31	chr9:99556800-99559200	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
32	chr9:99556800-99559200	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
33	chr9:99556800-99559200	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
34	chr9:99556800-99559200	ZNF genes & repeats	Aorta	Aorta
35	chr9:99556800-99559200	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
36	chr9:99556800-99559200	ZNF genes & repeats	Fetal Muscle Trunk	muscle
37	chr9:99556800-99559200	ZNF genes & repeats	Fetal Muscle Leg	muscle
38	chr9:99556800-99559200	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
39	chr9:99556800-99559400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
40	chr9:99556800-99559400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr9:99556800-99559400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr9:99556800-99559400	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr9:99556800-99559400	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr9:99556800-99559400	ZNF genes & repeats	Brain Germinal Matrix	brain
45	chr9:99556800-99559400	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
46	chr9:99556800-99559800	ZNF genes & repeats	Fetal Intestine Large	intestine
47	chr9:99557000-99559000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr9:99557000-99559000	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr9:99557000-99559000	ZNF genes & repeats	Colonic Mucosa	Colon
50	chr9:99557000-99559000	ZNF genes & repeats	Placenta	Placenta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links