Variant report

Variant	rs10817601
Chromosome Location	chr9:117159977-117159978
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TAF1	chr9:117159784-117160260	H1-hESC	embryonic stem cell:	n/a	n/a
2	MAX	chr9:117159125-117160977	K562	blood:	n/a	chr9:117159366-117159376 chr9:117159335-117159344 chr9:117159413-117159422
3	WRNIP1	chr9:117159228-117160219	GM12878	blood:	n/a	n/a
4	POLR2A	chr9:117159776-117160813	GM12891	blood:	n/a	n/a
5	POLR2A	chr9:117159626-117161210	GM12892	blood:	n/a	n/a
6	SMARCB1	chr9:117159574-117161079	Hela-S3	cervix:	n/a	n/a
7	NFIC	chr9:117159737-117160867	GM12878	blood:	n/a	n/a
8	POLR2A	chr9:117159826-117160854	GM12878	blood:	n/a	n/a
9	FOXM1	chr9:117159777-117160863	GM12878	blood:	n/a	n/a
10	EP300	chr9:117159066-117160688	K562	blood:	n/a	chr9:117160202-117160218 chr9:117159332-117159346 chr9:117160148-117160162
11	BCLAF1	chr9:117159846-117160334	GM12878	blood:	n/a	chr9:117160205-117160218
12	SP1	chr9:117159909-117161081	GM12878	blood:	n/a	chr9:117160790-117160799 chr9:117160358-117160370 chr9:117160295-117160305 chr9:117160358-117160370 chr9:117160702-117160711 chr9:117160789-117160801 chr9:117160360-117160369 chr9:117160907-117160916 chr9:117160791-117160800 chr9:117160701-117160710 chr9:117160791-117160800 chr9:117160789-117160801 chr9:117160789-117160800 chr9:117160906-117160918 chr9:117160857-117160868 chr9:117160700-117160712 chr9:117160908-117160917 chr9:117160786-117160800 chr9:117160906-117160918
13	SPI1	chr9:117159896-117160347	GM12891	blood:	n/a	n/a
14	RCOR1	chr9:117159317-117161171	K562	blood:	n/a	n/a
15	MAX	chr9:117159934-117160940	GM12878	blood:	n/a	n/a
16	POLR2A	chr9:117159817-117161005	GM12878	blood:	n/a	n/a
17	POLR2A	chr9:117159714-117161176	GM15510	blood:	n/a	n/a
18	MAX	chr9:117159328-117161172	ECC-1	luminal epithelium:	n/a	chr9:117159366-117159376 chr9:117159335-117159344 chr9:117159413-117159422
19	POU2F2	chr9:117159729-117161097	GM12878	blood:	n/a	chr9:117160808-117160819 chr9:117160806-117160819 chr9:117160806-117160820 chr9:117160807-117160817 chr9:117160806-117160818
20	ATF2	chr9:117159932-117160274	GM12878	blood:	n/a	n/a
21	MAX	chr9:117159649-117160994	ECC-1	luminal epithelium:	n/a	n/a
22	STAT3	chr9:117159633-117160639	GM12878	blood:	n/a	chr9:117160360-117160372 chr9:117160153-117160164 chr9:117160512-117160524
23	YY1	chr9:117159837-117160258	GM12891	blood:	n/a	n/a
24	MAZ	chr9:117159464-117161063	GM12878	blood:	n/a	n/a
25	PAX5	chr9:117159850-117160830	GM12878	blood:	n/a	chr9:117160391-117160400
26	POLR2A	chr9:117158911-117160859	K562	blood:	n/a	n/a
27	UBTF	chr9:117159795-117161051	K562	blood:	n/a	n/a
28	POLR2A	chr9:117159864-117160334	GM12878	blood:	n/a	n/a
29	MAX	chr9:117159939-117161238	A549	lung:	n/a	n/a
30	POLR2A	chr9:117159091-117161169	K562	blood:	n/a	n/a
31	RFX5	chr9:117159706-117160999	GM12878	blood:	n/a	chr9:117160275-117160292 chr9:117160276-117160291 chr9:117160276-117160291
32	POLR2A	chr9:117159953-117160356	HCT-116	colon:	n/a	n/a
33	RELA	chr9:117159739-117160825	GM18951	blood:	n/a	n/a
34	POLR2A	chr9:117159762-117161170	GM12892	blood:	n/a	n/a
35	CHD2	chr9:117159944-117161045	GM12878	blood:	n/a	chr9:117160906-117160916 chr9:117160786-117160796 chr9:117160791-117160801
36	STAT1	chr9:117159779-117161012	GM12878	blood:	n/a	chr9:117160360-117160372 chr9:117160792-117160804 chr9:117160153-117160164 chr9:117160512-117160524
37	TBL1XR1	chr9:117159170-117161120	K562	blood:	n/a	n/a
38	SPI1	chr9:117159885-117160292	GM12891	blood:	n/a	n/a
39	MXI1	chr9:117159973-117161064	HepG2	liver:	n/a	chr9:117160275-117160290
40	POLR2A	chr9:117159880-117161159	GM10847	blood:	n/a	n/a
41	STAT5A	chr9:117159632-117160254	GM12878	blood:	n/a	chr9:117160153-117160164
42	E2F6	chr9:117159242-117160866	K562	blood:	n/a	chr9:117160626-117160637
43	POLR2A	chr9:117159947-117160279	ECC-1	luminal epithelium:	n/a	n/a
44	RCOR1	chr9:117159062-117161188	K562	blood:	n/a	n/a
45	MAZ	chr9:117159115-117161156	K562	blood:	n/a	chr9:117159335-117159344 chr9:117159413-117159422
46	RFX5	chr9:117159871-117160982	HepG2	liver:	n/a	chr9:117160275-117160292 chr9:117160276-117160291 chr9:117160276-117160291
47	TAF1	chr9:117159849-117160320	GM12878	blood:	n/a	n/a
48	CTCF	chr9:117159900-117160050	HA-sp	spinal cord:	n/a	n/a
49	POLR2A	chr9:117159232-117161099	GM12878	blood:	n/a	n/a
50	SIN3A	chr9:117159869-117160777	GM12878	blood:	n/a	n/a

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr9:117159975-117160025	AG10803	skin:	n/a
2	chr9:117159975-117160025	HPAEpiC	pulmonary alveolar:	n/a
3	chr9:117159975-117160025	AG04449	skin:	fetal
4	chr9:117159975-117160025	SAEC	small airway:	n/a
5	chr9:117159975-117160025	AG09319	gingival:	n/a
6	chr9:117159975-117160025	HIPEpiC	eye:	n/a
7	chr9:117159975-117160025	HRE	kidney:	n/a
8	chr9:117159975-117160025	HRPEpiC	eye:	n/a
9	chr9:117159975-117160025	SK-N-SH	brain:	n/a
10	chr9:117159975-117160025	GM12891	blood:	n/a
11	chr9:117159975-117160025	HMEC	breast:	n/a
12	chr9:117159975-117160025	LNCaP	prostate:	n/a
13	chr9:117159975-117160025	GM12878	blood:	n/a
14	chr9:117159975-117160025	PANC-1	pancreas:	n/a
15	chr9:117159975-117160025	MCF10A-Er-Src	breast:	n/a
16	chr9:117159975-117160025	HCF	heart:	n/a
17	chr9:117159975-117160025	BE2_C	brain:	n/a
18	chr9:117159975-117160025	GM19239	blood:	n/a
19	chr9:117159975-117160025	NHDF-neo	bronchial:	n/a
20	chr9:117159975-117160025	RPTEC	kidney:	n/a
21	chr9:117159975-117160025	AoSMC	blood vessel:	n/a
22	chr9:117159975-117160025	SK-N-MC	brain:	n/a
23	chr9:117159975-117160025	NB4	blood:	n/a
24	chr9:117159975-117160025	HAEpiC	amniotic membrane:	n/a
25	chr9:117159975-117160025	K562	blood:	n/a
26	chr9:117159975-117160025	IMR90	lung:	fetal
27	chr9:117159975-117160025	HEK293	kidney:	embryo
28	chr9:117159975-117160025	CMK	blood:	n/a
29	chr9:117159975-117160025	ovcar-3	ovarian:	n/a
30	chr9:117159975-117160025	Jurkat	blood:	n/a
31	chr9:117159975-117160025	ECC-1	luminal epithelium:	n/a
32	chr9:117159975-117160025	HNPCEpiC	eye:	n/a
33	chr9:117159975-117160025	NHBE	bronchial:	n/a
34	chr9:117159975-117160025	HEEpiC	esophagus:	n/a
35	chr9:117159975-117160025	HUVEC	blood vessel:	n/a
36	chr9:117159975-117160025	T-47D	breast:	n/a
37	chr9:117159975-117160025	HCM	heart:	n/a
38	chr9:117159975-117160025	PFSK-1	brain:	n/a
39	chr9:117159975-117160025	Hela-S3	cervix:	n/a
40	chr9:117159975-117160025	HCT-116	colon:	n/a
41	chr9:117159975-117160025	HCPEpiC	choroid plexus:	n/a
42	chr9:117159975-117160025	HepG2	liver:	n/a
43	chr9:117159975-117160025	Caco-2	colon:	n/a
44	chr9:117159975-117160025	NH-A	brain:	n/a
45	chr9:117159975-117160025	MCF-7	breast:	n/a
46	chr9:117159975-117160025	HL-60	blood:	n/a
47	chr9:117159975-117160025	AG09309	skin:	n/a
48	chr9:117159975-117160025	GM06990	blood:	n/a
49	chr9:117159975-117160025	A549	lung:	n/a
50	chr9:117159975-117160025	HRCEpiC	kidney:	n/a

No.	Distal block	Cell Line	Cell type
1	chr9:117159319..117161244-chr9:117264260..117266190,2	MCF-7	breast:
2	chr9:117158501..117160733-chr9:117167774..117169910,2	K562	blood:
3	chr9:117158123..117160127-chr9:117266817..117268504,2	MCF-7	breast:
4	chr9:117108355..117112346-chr9:117155430..117161997,5	MCF-7	breast:
5	chr9:117157483..117160284-chr9:117162709..117165492,2	K562	blood:
6	chr9:117136553..117139395-chr9:117157861..117162089,3	K562	blood:
7	chr9:117155204..117158702-chr9:117159212..117161849,5	MCF-7	breast:
8	chr9:117158447..117160644-chr9:117174515..117176185,2	K562	blood:
9	chr9:117135087..117138049-chr9:117158281..117160655,2	MCF-7	breast:
10	chr9:117157540..117162429-chr9:117265948..117270229,5	K562	blood:
11	chr9:117158967..117160760-chr9:117784217..117787013,2	K562	blood:
12	chr9:117148465..117156866-chr9:117157996..117162015,11	K562	blood:

Variant related genes	Relation type
AKNA	TF binding region
AKNA	CpG island
ENSG00000095397	Chromatin interaction
ENSG00000106948	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10114489	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1075559	1.00[CEU][hapmap];0.93[JPT][hapmap];0.94[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1075560	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10817603	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10817604	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10817605	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12340861	0.85[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12340863	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12351392	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12380875	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17231346	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1886377	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2104363	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2636893	0.81[JPT][hapmap]
rs2763196	0.81[JPT][hapmap]
rs2787329	0.81[JPT][hapmap]
rs28673998	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28719625	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55833018	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9987709	0.82[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:34 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
2	esv2422396	chr9:116792944-117354862	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	155 gene(s)	inside rSNPs	diseases
3	esv2422492	chr9:116811294-117366643	Genic enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	155 gene(s)	inside rSNPs	diseases
4	nsv466533	chr9:116930100-117248479	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	128 gene(s)	inside rSNPs	diseases
5	nsv615233	chr9:116930100-117248479	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	128 gene(s)	inside rSNPs	diseases
6	nsv1051544	chr9:116944940-117443031	ZNF genes & repeats Genic enhancers Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	157 gene(s)	inside rSNPs	diseases
7	nsv540203	chr9:116944940-117443031	Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	157 gene(s)	inside rSNPs	diseases
8	nsv1048093	chr9:116945025-117456210	Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	157 gene(s)	inside rSNPs	diseases
9	nsv1050991	chr9:116953739-117442999	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	157 gene(s)	inside rSNPs	diseases
10	nsv1046311	chr9:116953739-117447142	Genic enhancers Transcr. at gene 5' and 3' Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	157 gene(s)	inside rSNPs	diseases
11	nsv1052877	chr9:116953739-117456210	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	157 gene(s)	inside rSNPs	diseases
12	nsv1039681	chr9:116953739-117457158	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	157 gene(s)	inside rSNPs	diseases
13	nsv1051987	chr9:116955841-117453668	Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	157 gene(s)	inside rSNPs	diseases
14	nsv1044374	chr9:116955841-117460150	Genic enhancers Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	157 gene(s)	inside rSNPs	diseases
15	nsv466534	chr9:116956268-117455810	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	157 gene(s)	inside rSNPs	diseases
16	nsv615234	chr9:116956268-117455810	Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	157 gene(s)	inside rSNPs	diseases
17	nsv1048817	chr9:116957958-117456210	Flanking Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	157 gene(s)	inside rSNPs	diseases
18	nsv615235	chr9:116958144-117367061	ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	148 gene(s)	inside rSNPs	diseases
19	nsv615236	chr9:116958144-117455810	Strong transcription Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	157 gene(s)	inside rSNPs	diseases
20	nsv466535	chr9:116958144-117456175	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	157 gene(s)	inside rSNPs	diseases
21	nsv615237	chr9:116958144-117456175	Strong transcription Active TSS Genic enhancers Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	157 gene(s)	inside rSNPs	diseases
22	nsv615238	chr9:116958144-117458475	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	157 gene(s)	inside rSNPs	diseases
23	nsv430094	chr9:116958446-117456446	Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	157 gene(s)	inside rSNPs	diseases
24	nsv1053756	chr9:116975934-117443031	Enhancers Genic enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
25	nsv540204	chr9:116975934-117443031	Genic enhancers Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
26	nsv1047704	chr9:116978041-117399362	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
27	nsv540205	chr9:116978041-117399362	Enhancers Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
28	nsv530950	chr9:117009156-117399361	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
29	nsv916139	chr9:117009169-117399454	Weak transcription Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
30	nsv1047822	chr9:117010663-117211517	Flanking Active TSS Enhancers Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
31	nsv530951	chr9:117032675-117439804	Flanking Active TSS Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
32	nsv1050256	chr9:117106276-117247033	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
33	nsv540206	chr9:117106276-117247033	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
34	nsv831693	chr9:117116450-117281895	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117159000-117160000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr9:117159000-117160000	Flanking Active TSS	Primary B cells from cord blood	blood
3	chr9:117159000-117160000	Flanking Active TSS	GM12878-XiMat	blood
4	chr9:117159000-117160000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
5	chr9:117159000-117160200	Flanking Active TSS	Adipose Nuclei	Adipose
6	chr9:117159000-117160600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
7	chr9:117159000-117161000	Active TSS	HSMMtube	muscle
8	chr9:117159200-117160000	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
9	chr9:117159200-117160000	Flanking Active TSS	Primary T cells from cord blood	blood
10	chr9:117159200-117160000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
11	chr9:117159200-117160000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
12	chr9:117159200-117160000	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
13	chr9:117159200-117160000	Flanking Active TSS	Brain Anterior Caudate	brain
14	chr9:117159200-117160000	Flanking Active TSS	Fetal Lung	lung
15	chr9:117159200-117160000	Flanking Active TSS	Rectal Smooth Muscle	rectum
16	chr9:117159200-117160000	Flanking Active TSS	Thymus	Thymus
17	chr9:117159200-117160000	Flanking Active TSS	K562	blood
18	chr9:117159200-117160200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
19	chr9:117159200-117160200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
20	chr9:117159200-117160200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
21	chr9:117159200-117160200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
22	chr9:117159200-117160200	Flanking Active TSS	Duodenum Mucosa	Duodenum
23	chr9:117159200-117160200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
24	chr9:117159200-117160200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
25	chr9:117159200-117160200	Flanking Active TSS	Stomach Smooth Muscle	stomach
26	chr9:117159200-117160200	Flanking Active TSS	HepG2	liver
27	chr9:117159200-117160600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr9:117159200-117160800	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
29	chr9:117159400-117160000	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
30	chr9:117159400-117160000	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
31	chr9:117159400-117160000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr9:117159400-117160000	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
33	chr9:117159400-117160000	Flanking Active TSS	Stomach Mucosa	stomach
34	chr9:117159400-117160200	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr9:117159400-117160200	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr9:117159400-117160200	Flanking Active TSS	Primary T cells fromperipheralblood	blood
37	chr9:117159400-117160200	Flanking Active TSS	Primary hematopoietic stem cells	blood
38	chr9:117159400-117160200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
39	chr9:117159400-117160200	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr9:117159400-117160200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr9:117159400-117160200	Flanking Active TSS	Brain Hippocampus Middle	brain
42	chr9:117159400-117160800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr9:117159400-117161200	Flanking Active TSS	Fetal Muscle Leg	muscle
44	chr9:117159600-117160000	Flanking Active TSS	Primary B cells from peripheral blood	blood
45	chr9:117159600-117160000	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
46	chr9:117159600-117160000	Flanking Active TSS	Brain Substantia Nigra	brain
47	chr9:117159600-117160200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr9:117159600-117160200	Flanking Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr9:117159600-117160200	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr9:117159600-117160200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood

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