Variant report

Variant	rs10817762
Chromosome Location	chr9:118161597-118161598
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10123209	0.82[ASW][hapmap];0.82[YRI][hapmap]
rs10817761	0.82[ASW][hapmap]
rs1335141	0.82[CHB][hapmap]
rs2269700	0.82[CHB][hapmap]
rs3893062	0.82[ASW][hapmap]
rs4145474	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs916553	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv615251	chr9:117975864-118514444	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv948346	chr9:118107565-118718197	Enhancers Bivalent Enhancer Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1042957	chr9:118153824-118313540	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv2761245	chr9:118157164-118171298	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
5	nsv519995	chr9:118157729-118163797	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10817762	UGCG	cis	parietal	SCAN

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:118154600-118161800	Weak transcription	Fetal Kidney	kidney
2	chr9:118157400-118162200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr9:118158800-118162600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr9:118158800-118163200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr9:118159000-118161600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr9:118159000-118170600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr9:118159200-118163000	Weak transcription	Fetal Muscle Leg	muscle
8	chr9:118159200-118163200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr9:118159200-118163200	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr9:118159200-118163200	Weak transcription	NH-A	brain
11	chr9:118159200-118163800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr9:118160000-118164200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr9:118160400-118161800	Enhancers	Fetal Lung	lung
14	chr9:118160400-118164600	Enhancers	NHDF-Ad	bronchial
15	chr9:118160400-118173600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr9:118160600-118161600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr9:118160600-118161600	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr9:118160600-118161800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr9:118160600-118161800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr9:118160600-118162000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr9:118160600-118162200	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr9:118160600-118163200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr9:118161200-118161600	Enhancers	Osteobl	bone
24	chr9:118161400-118161800	Enhancers	Spleen	Spleen
25	chr9:118161400-118162200	Enhancers	H1 Cell Line	embryonic stem cell
26	chr9:118161400-118162200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr9:118161400-118162200	Enhancers	Right Atrium	heart
28	chr9:118161400-118162400	Enhancers	H9 Cell Line	embryonic stem cell
29	chr9:118161400-118163000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr9:118161400-118163400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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