Variant report

Variant	rs10818023
Chromosome Location	chr9:100514919-100514920
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10983035	1.00[ASW][hapmap];1.00[LWK][hapmap]
rs12375515	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12377067	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043753	chr9:100458109-100599265	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv614934	chr9:100482976-100550253	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs10818023	COL15A1	cis	parietal	SCAN
rs10818023	C9orf156	cis	parietal	SCAN
rs10818023	C9orf156	cis	cerebellum	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100514000-100515000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:100514000-100516200	Enhancers	Fetal Intestine Small	intestine
3	chr9:100514000-100516400	Enhancers	Fetal Intestine Large	intestine
4	chr9:100514200-100515000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr9:100514200-100515200	Enhancers	HMEC	breast
6	chr9:100514200-100515200	Enhancers	NHEK	skin
7	chr9:100514200-100521400	Weak transcription	HepG2	liver
8	chr9:100514400-100515000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr9:100514400-100515200	Enhancers	Esophagus	oesophagus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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