Variant report

Variant	rs10819688
Chromosome Location	chr9:102355080-102355081
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10819685	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs10819691	1.00[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs10988856	1.00[AFR][1000 genomes]
rs10988872	1.00[AFR][1000 genomes]
rs62563081	1.00[AFR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529618	chr9:102227922-103044018	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv893621	chr9:102342950-102585545	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102351200-102355200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr9:102352400-102356000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr9:102353200-102356000	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr9:102353600-102358000	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr9:102353600-102358000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr9:102353600-102358000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr9:102353600-102358000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr9:102353800-102355200	Weak transcription	Primary B cells from peripheral blood	blood
9	chr9:102354400-102356600	Enhancers	Primary B cells from cord blood	blood
10	chr9:102355000-102355400	Flanking Active TSS	GM12878-XiMat	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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