Variant report

Variant	rs10820803
Chromosome Location	chr9:108210990-108210991
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:7080074..7080803-chr9:108210357..108211069,2	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000126749	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs3818598	0.83[AFR][1000 genomes]
rs7037141	0.86[AFR][1000 genomes]
rs7852541	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037750	chr9:108027692-108251733	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1053973	chr9:108199177-108300186	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv615115	chr9:108205262-108298183	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108209600-108211000	Active TSS	Brain Anterior Caudate	brain
2	chr9:108209600-108211000	Active TSS	Rectal Smooth Muscle	rectum
3	chr9:108209600-108211200	Active TSS	Brain Angular Gyrus	brain
4	chr9:108209600-108211400	Active TSS	ES-I3 Cell Line	embryonic stem cell
5	chr9:108209600-108211400	Active TSS	HUES6 Cell Line	embryonic stem cell
6	chr9:108209600-108211400	Active TSS	HUES64 Cell Line	embryonic stem cell
7	chr9:108209600-108211400	Active TSS	iPS-18 Cell Line	embryonic stem cell
8	chr9:108209600-108211400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr9:108209600-108211400	Active TSS	Breast Myoepithelial Primary Cells	Breast
10	chr9:108209600-108211400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
11	chr9:108209600-108211400	Active TSS	Pancreatic Islets	Pancreatic Islet
12	chr9:108209600-108211600	Active TSS	H1 Cell Line	embryonic stem cell
13	chr9:108209600-108211600	Active TSS	HUES48 Cell Line	embryonic stem cell
14	chr9:108209600-108211600	Active TSS	Fetal Brain Female	brain
15	chr9:108209600-108211600	Active TSS	Fetal Intestine Small	intestine
16	chr9:108209600-108211600	Active TSS	K562	blood
17	chr9:108209600-108211800	Active TSS	H9 Cell Line	embryonic stem cell
18	chr9:108209600-108211800	Active TSS	Fetal Kidney	kidney
19	chr9:108209600-108211800	Active TSS	NHDF-Ad	bronchial
20	chr9:108209600-108212000	Active TSS	iPS-20b Cell Line	embryonic stem cell
21	chr9:108209800-108211000	Active TSS	iPS-15b Cell Line	embryonic stem cell
22	chr9:108209800-108211000	Active TSS	Primary T helper naive cells from peripheral blood	blood
23	chr9:108209800-108211000	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
24	chr9:108209800-108211000	Active TSS	Fetal Lung	lung
25	chr9:108209800-108211000	Active TSS	Small Intestine	intestine
26	chr9:108209800-108211200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr9:108209800-108211200	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr9:108209800-108211200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr9:108209800-108211200	Flanking Active TSS	Primary B cells from cord blood	blood
30	chr9:108209800-108211200	Flanking Active TSS	Primary hematopoietic stem cells	blood
31	chr9:108209800-108211200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr9:108209800-108211200	Active TSS	Aorta	Aorta
33	chr9:108209800-108211200	Active TSS	Lung	lung
34	chr9:108209800-108211200	Active TSS	Ovary	ovary
35	chr9:108209800-108211400	Active TSS	Colon Smooth Muscle	Colon
36	chr9:108209800-108211400	Active TSS	Duodenum Smooth Muscle	Duodenum
37	chr9:108209800-108212000	Active TSS	HSMMtube	muscle
38	chr9:108209800-108212200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr9:108209800-108212400	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr9:108209800-108212800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr9:108210000-108211000	Active TSS	Brain Cingulate Gyrus	brain
42	chr9:108210000-108211000	Active TSS	Sigmoid Colon	Sigmoid Colon
43	chr9:108210000-108211000	Bivalent/Poised TSS	HepG2	liver
44	chr9:108210000-108211200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr9:108210000-108211200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr9:108210000-108211200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
47	chr9:108210000-108211200	Active TSS	Colonic Mucosa	Colon
48	chr9:108210000-108211200	Active TSS	Left Ventricle	heart
49	chr9:108210000-108211200	Active TSS	Osteobl	bone
50	chr9:108210000-108211400	Active TSS	ES-WA7 Cell Line	embryonic stem cell

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